Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DG474_RS08150 Genome accession   NZ_CP029257
Coordinates   1693013..1694980 (-) Length   655 a.a.
NCBI ID   WP_000837392.1    Uniprot ID   A0A4V1QBR2
Organism   Streptococcus oralis strain CCUG 53468     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1695744..1696085 1693013..1694980 flank 764


Gene organization within MGE regions


Location: 1693013..1696085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS08150 (DG474_08280) amiA 1693013..1694980 (-) 1968 WP_000837392.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS08155 (DG474_08285) - 1695696..1696085 (+) 390 Protein_1556 IS3 family transposase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72439.92 Da        Isoelectric Point: 5.0129

>NTDB_id=291435 DG474_RS08150 WP_000837392.1 1693013..1694980(-) (amiA) [Streptococcus oralis strain CCUG 53468]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=291435 DG474_RS08150 WP_000837392.1 1693013..1694980(-) (amiA) [Streptococcus oralis strain CCUG 53468]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAGGCTGATGCCCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCG
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTACTGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAATTCTAAGGTTACAACTGC
TACCATGCTTCCAGTTAATGAAGAATTCTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACTCCATCGGGTATCCTAT
ATAATGGTCCTTACTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGTGCTTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TCTACAGTCCACAAGAAGCGACTAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTATAATAAAACAGCTAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGATCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCTCAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGGGTTACCTTCCCAATCCATTTGGATATCCCCGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTTGATGTCCTTCAAATGACCGATAATGAGAAAATA
AGCATTACGTCTCAAGCCAAGGTTCCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGGCCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCCAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCACTCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTTGATGAGTACAAAAAGCTCTTGGATGATGCTGCAGCTGAAACCAGCGACCTTAAC
AAGCGTTATGAAAAATATGCTAAAGCTCAAGCTTGGGTGTCTGATAGCTCACTCTTGATTCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTCACAAAAGCTTATTCTCAAGTCGGGATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1QBR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54

Multiple sequence alignment