Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DG474_RS08335 Genome accession   NZ_CP029257
Coordinates   1744043..1745803 (-) Length   586 a.a.
NCBI ID   WP_255778068.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1739043..1750803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS08305 (DG474_08445) - 1739721..1741388 (-) 1668 WP_000036688.1 DAK2 domain-containing protein -
  DG474_RS08310 (DG474_08450) - 1741391..1741756 (-) 366 WP_042902923.1 Asp23/Gls24 family envelope stress response protein -
  DG474_RS08315 (DG474_08455) rpmB 1741909..1742097 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  DG474_RS08320 (DG474_08460) - 1742202..1742876 (-) 675 WP_009729740.1 hypothetical protein -
  DG474_RS08325 (DG474_08465) - 1742882..1743328 (-) 447 WP_042902924.1 LytTR family DNA-binding domain-containing protein -
  DG474_RS08330 (DG474_08470) - 1743442..1743945 (-) 504 WP_042902925.1 phosphatase PAP2 family protein -
  DG474_RS08335 (DG474_08475) rcrQ 1744043..1745803 (-) 1761 WP_255778068.1 ABC transporter ATP-binding protein Regulator
  DG474_RS08340 (DG474_08480) rcrP 1745793..1747562 (-) 1770 WP_042902927.1 ABC transporter ATP-binding protein Regulator
  DG474_RS08345 (DG474_08485) - 1747546..1748007 (-) 462 WP_084859619.1 MarR family winged helix-turn-helix transcriptional regulator -
  DG474_RS08350 (DG474_08490) - 1748200..1748904 (+) 705 WP_255778070.1 CD20-like domain-containing protein -
  DG474_RS08355 (DG474_08495) - 1748954..1749670 (-) 717 WP_044021424.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64546.30 Da        Isoelectric Point: 5.3225

>NTDB_id=291436 DG474_RS08335 WP_255778068.1 1744043..1745803(-) (rcrQ) [Streptococcus oralis strain CCUG 53468]
MENKKVSVWKQCKPYMAGLQLPLLIAVVAAVISSIITVYGPTKIKEITNLISDGLATEIDLVAVSNIASFLVILYVFGAI
LNYTQAYIFSTSIQHFSKRLRTAIAEKINRLPLGYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSASFLLIAVLVTM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTSKARFAGLNQDLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVIIVGAALALEGHITIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVLE
FLAEAEMQDESHKDRKLSNMKGEVVFDHVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKDMKRSEVHDAFSMVLQDTWLFEGTIRENLIYNQTGISDERMMEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=291436 DG474_RS08335 WP_255778068.1 1744043..1745803(-) (rcrQ) [Streptococcus oralis strain CCUG 53468]
ATGGAAAATAAAAAAGTTTCGGTCTGGAAACAGTGCAAACCTTATATGGCAGGCCTCCAACTCCCTCTCCTAATAGCAGT
TGTGGCTGCAGTCATTTCAAGCATAATCACCGTTTATGGTCCAACTAAGATTAAGGAAATTACCAACTTGATTTCAGATG
GCTTGGCTACAGAAATCGACCTGGTAGCTGTGTCAAACATTGCTAGCTTTTTAGTGATTCTCTATGTATTTGGCGCTATC
CTTAATTATACACAGGCCTATATCTTTTCAACGAGCATTCAGCATTTTTCAAAACGCTTGCGGACGGCAATCGCTGAAAA
AATCAATCGTTTGCCACTTGGCTATTTTGACCGTCATTCACAAGGAGATACCCTTTCGCGCGTGACCAATGATGTGGATA
CAGCAGCGCAATCTCTCAACCAAAGTCTAGGGACAGTTCTTTCAGCTAGTTTCTTGTTGATTGCTGTCTTGGTGACCATG
TTTGGGATGAACTGGATTTTGGCATTGGTAACCGTTGTATCAACCCTTGTTGGTTTTGCGGCGGTTTCCGTAATCATGGC
CAAGTCACAGGGTTATTTTAAAGCCCAACAAAATAATCTAGCAGCCGTCAATGGTTATGTAGAAGAAATGTACTCAGGTC
ATAATGTTGTGACCAGTTACAACGCAGTGGACACCTCCAAAGCGAGATTTGCAGGTTTAAACCAAGACTTGCATGATAGT
ATCTGGAAATCTCAGTTTATCTCTGGTATCATGATGCCAGCCATGTTCTTTGTTGGAAACTTTAGTTATGTCTTAGTCAT
CATCGTTGGTGCCGCGCTGGCGTTAGAAGGGCATATCACGATAGGGATTATCGTAGCCTTTATGGTTTACGTACGGACCT
TCTCCCAACCTCTGTCACAGATTGCCCAAGGGATTACGAGCCTGCAACAAGCGAGTGCAGCCATGACTCGTGTATTAGAA
TTTCTAGCTGAAGCAGAGATGCAAGATGAATCTCATAAGGACAGAAAATTGAGCAACATGAAAGGGGAAGTAGTCTTTGA
TCATGTGTCCTTTGGCTATACACCAGAGCGCACCATCATCCATGACTTTTCTGCGACAGCTCATGCAGGTCAGAAGGTTG
CTATCGTTGGACCGACTGGGGCTGGGAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGATAGATAAGGGAAGC
ATCCGCATCGATGGCGTGGATACTAAGGACATGAAACGCTCAGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
TTGGCTCTTTGAAGGAACCATTCGAGAGAACCTGATCTACAATCAAACGGGCATCAGCGATGAACGAATGATGGAGGCCA
GCAAGGCTGTGGGAATCCACCACTTTATCATGACCTTGCCAGATGGCTACGATACTGTTTTGGATGACACTGTGACCTTG
TCTGTTGGACAAAAACAGCTCTTAACTATTGCTCGTGCCCTTCTCAAGGATGCACCACTCTTGATTTTGGATGAAGCGAC
ATCTTCAGTCGACACACGTACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAGGGAAGAACTTCCTTTGTCA
TTGCCCATCGCTTGTCAACTATTCGTAATGCAGATTTGATTCTTGTCATGAAAGATGGCAATATCATCGAACAAGGCAAC
CATGAGGAACTGATGGCGCAAGGTGGTTTCTATGCCGACTTGTACAATAGCCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.781

99.659

0.666

Multiple sequence alignment