Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7235_RS23290 Genome accession   NZ_CP029242
Coordinates   4479603..4480139 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain ECCRA-119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4474603..4485139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7235_RS23265 (C7235_23265) soxR 4476331..4476795 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  C7235_RS23270 (C7235_23270) soxS 4476881..4477204 (+) 324 WP_000019364.1 superoxide response transcriptional regulator SoxS -
  C7235_RS23275 (C7235_23275) pdeC 4477207..4478793 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  C7235_RS23285 (C7235_23285) yjcB 4479223..4479504 (+) 282 WP_001295689.1 YjcB family protein -
  C7235_RS23290 (C7235_23290) ssb 4479603..4480139 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C7235_RS23295 (C7235_23295) uvrA 4480393..4483215 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C7235_RS23300 (C7235_23300) yjbR 4483250..4483606 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C7235_RS23305 (C7235_23305) yjbQ 4483610..4484026 (-) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C7235_RS23310 (C7235_23310) aphA 4484137..4484850 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=291331 C7235_RS23290 WP_000168305.1 4479603..4480139(-) (ssb) [Escherichia coli strain ECCRA-119]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=291331 C7235_RS23290 WP_000168305.1 4479603..4480139(-) (ssb) [Escherichia coli strain ECCRA-119]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment