Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A1D75_RS00095 Genome accession   NZ_CP034806
Coordinates   17980..18516 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 2010C-3347     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 12980..23516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D75_RS00075 aphA 13268..13981 (+) 714 WP_001226923.1 acid phosphatase AphA -
  A1D75_RS00080 yjbQ 14092..14508 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A1D75_RS00085 yjbR 14512..14868 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  A1D75_RS00090 uvrA 14903..17725 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  A1D75_RS00095 ssb 17980..18516 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A1D75_RS00100 yjcB 18615..18896 (-) 282 WP_001295689.1 YjcB family protein -
  A1D75_RS00105 pdeC 19325..20911 (+) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  A1D75_RS00110 soxS 20914..21237 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  A1D75_RS00115 soxR 21323..21787 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=291281 A1D75_RS00095 WP_000168305.1 17980..18516(+) (ssb) [Escherichia coli strain 2010C-3347]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=291281 A1D75_RS00095 WP_000168305.1 17980..18516(+) (ssb) [Escherichia coli strain 2010C-3347]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489