Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DEH84_RS02200 | Genome accession | NZ_CP029210 |
| Coordinates | 492893..493426 (-) | Length | 177 a.a. |
| NCBI ID | WP_109034352.1 | Uniprot ID | A0A2U8FN18 |
| Organism | Aquabacterium olei strain NBRC 110486 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 487893..498426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DEH84_RS02180 (DEH84_02180) | - | 488066..488698 (-) | 633 | WP_218929747.1 | cytochrome c oxidase subunit 3 | - |
| DEH84_RS02185 (DEH84_02185) | - | 489193..490431 (+) | 1239 | WP_109034346.1 | hypothetical protein | - |
| DEH84_RS02190 (DEH84_02190) | - | 490466..491691 (+) | 1226 | WP_109034349.1 | IS3 family transposase | - |
| DEH84_RS02195 (DEH84_02195) | - | 491670..492497 (-) | 828 | WP_218929748.1 | ATP-binding protein | - |
| DEH84_RS02200 (DEH84_02200) | ssb | 492893..493426 (-) | 534 | WP_109034352.1 | single-stranded DNA-binding protein | Machinery gene |
| DEH84_RS02205 (DEH84_02205) | - | 493619..494389 (+) | 771 | WP_109034354.1 | class II glutamine amidotransferase | - |
| DEH84_RS02210 (DEH84_02210) | - | 494394..495584 (-) | 1191 | WP_109034357.1 | isovaleryl-CoA dehydrogenase | - |
| DEH84_RS02215 (DEH84_02215) | - | 495654..496565 (-) | 912 | WP_109034359.1 | hydroxymethylglutaryl-CoA lyase | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 18926.96 Da Isoelectric Point: 5.3608
>NTDB_id=291228 DEH84_RS02200 WP_109034352.1 492893..493426(-) (ssb) [Aquabacterium olei strain NBRC 110486]
MASINKVILIGNLGRDPEVRYTPNGAAVCNVSVATTRNWKDKNSGDKVEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKDGKDNYTTEIVAEQMQLLGGREGGSGGGYGGGAQGSGYGGGQGGGDEFEQAPPARPAARPAPAPRPAPAP
APKSSTGFDDMDDDIPF
MASINKVILIGNLGRDPEVRYTPNGAAVCNVSVATTRNWKDKNSGDKVEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKDGKDNYTTEIVAEQMQLLGGREGGSGGGYGGGAQGSGYGGGQGGGDEFEQAPPARPAARPAPAPRPAPAP
APKSSTGFDDMDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=291228 DEH84_RS02200 WP_109034352.1 492893..493426(-) (ssb) [Aquabacterium olei strain NBRC 110486]
ATGGCCTCCATCAACAAAGTCATCCTCATCGGCAACCTGGGTCGCGACCCCGAAGTGCGTTACACCCCCAACGGCGCTGC
GGTGTGCAACGTCTCGGTGGCCACCACGCGCAACTGGAAGGACAAGAATTCCGGTGACAAGGTGGAGGAAACGGAATGGC
ACCGCGTCGTGTTCTATGACCGCCTGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCCCGTGTACGTGGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACGGCAAGGACAACTACACGACCGAGATCGTTGCCGAACAGATGCAACT
GCTCGGCGGCCGTGAGGGCGGCAGTGGCGGTGGCTATGGCGGCGGCGCCCAGGGCAGCGGCTACGGCGGCGGTCAGGGTG
GCGGCGACGAGTTCGAGCAGGCCCCCCCGGCCCGTCCGGCTGCGCGCCCGGCACCGGCCCCCCGTCCGGCACCCGCACCG
GCCCCCAAGTCGTCGACTGGGTTTGACGACATGGATGACGACATTCCGTTCTAG
ATGGCCTCCATCAACAAAGTCATCCTCATCGGCAACCTGGGTCGCGACCCCGAAGTGCGTTACACCCCCAACGGCGCTGC
GGTGTGCAACGTCTCGGTGGCCACCACGCGCAACTGGAAGGACAAGAATTCCGGTGACAAGGTGGAGGAAACGGAATGGC
ACCGCGTCGTGTTCTATGACCGCCTGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCCCGTGTACGTGGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACGGCAAGGACAACTACACGACCGAGATCGTTGCCGAACAGATGCAACT
GCTCGGCGGCCGTGAGGGCGGCAGTGGCGGTGGCTATGGCGGCGGCGCCCAGGGCAGCGGCTACGGCGGCGGTCAGGGTG
GCGGCGACGAGTTCGAGCAGGCCCCCCCGGCCCGTCCGGCTGCGCGCCCGGCACCGGCCCCCCGTCCGGCACCCGCACCG
GCCCCCAAGTCGTCGACTGGGTTTGACGACATGGATGACGACATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50.802 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
51.075 |
100 |
0.537 |
| ssb | Neisseria gonorrhoeae MS11 |
51.075 |
100 |
0.537 |
| ssb | Vibrio cholerae strain A1552 |
48.677 |
100 |
0.52 |