Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DEH83_RS02890 Genome accession   NZ_CP029207
Coordinates   588414..588905 (-) Length   163 a.a.
NCBI ID   WP_003030533.1    Uniprot ID   F9PAY8
Organism   Streptococcus constellatus strain TCV107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 583414..593905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS02875 (DEH83_02845) - 586327..587271 (+) 945 WP_003070861.1 magnesium transporter CorA family protein -
  DEH83_RS02880 (DEH83_02850) - 587287..587964 (+) 678 WP_255777002.1 DUF1129 domain-containing protein -
  DEH83_RS02885 (DEH83_02855) rpsR 588138..588377 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  DEH83_RS02890 (DEH83_02860) ssb 588414..588905 (-) 492 WP_003030533.1 single-stranded DNA-binding protein Machinery gene
  DEH83_RS02895 (DEH83_02865) rpsF 588917..589207 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  DEH83_RS02900 (DEH83_02870) - 589484..590527 (+) 1044 WP_255777003.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  DEH83_RS02905 (DEH83_02875) - 590524..591429 (+) 906 WP_255777004.1 phosphodiester glycosidase family protein -
  DEH83_RS02910 (DEH83_02880) - 591404..591832 (+) 429 WP_255777005.1 hypothetical protein -
  DEH83_RS02915 - 591913..592502 (-) 590 Protein_572 histidine phosphatase family protein -
  DEH83_RS02920 (DEH83_02895) - 592514..593353 (-) 840 WP_255777006.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18157.86 Da        Isoelectric Point: 4.9008

>NTDB_id=291171 DEH83_RS02890 WP_003030533.1 588414..588905(-) (ssb) [Streptococcus constellatus strain TCV107]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYASNNFGNSSSNFGNATSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=291171 DEH83_RS02890 WP_003030533.1 588414..588905(-) (ssb) [Streptococcus constellatus strain TCV107]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCGGACTTTATTAATGTTGTAATTT
GGCGCCAACAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAATTACCGGTCGTATTCAGACGCGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTCCAACTATTGGAAAGCCGTGC
TAGTCGTGAAGGTCAATCTTCTGGTGGCTATGCTTCCAACAACTTCGGAAATTCATCTTCCAATTTTGGTAACGCAACTT
CTGCCAACCAAGTACCTAACTTTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.523

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment