Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   DEH83_RS02010 Genome accession   NZ_CP029207
Coordinates   414232..414906 (+) Length   224 a.a.
NCBI ID   WP_255776935.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 409232..419906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS01980 (DEH83_01960) - 409574..409858 (-) 285 WP_255776934.1 DUF3165 family protein -
  DEH83_RS01985 (DEH83_01965) typA 409923..411764 (-) 1842 WP_003070156.1 translational GTPase TypA -
  DEH83_RS01990 (DEH83_01970) - 411945..412670 (+) 726 WP_134971179.1 pseudouridine synthase -
  DEH83_RS01995 (DEH83_01975) - 412691..413071 (-) 381 WP_003070160.1 rhodanese-like domain-containing protein -
  DEH83_RS02000 (DEH83_01980) - 413065..413289 (-) 225 WP_003070161.1 YqgQ family protein -
  DEH83_RS02005 (DEH83_01985) - 413554..414081 (-) 528 WP_247926933.1 DNA starvation/stationary phase protection protein -
  DEH83_RS02010 (DEH83_01990) cclA/cilC 414232..414906 (+) 675 WP_255776935.1 A24 family peptidase Machinery gene
  DEH83_RS02015 (DEH83_01995) - 414901..415419 (-) 519 WP_003070167.1 VanZ family protein -
  DEH83_RS02020 (DEH83_02000) rlmN 415412..416494 (-) 1083 WP_187328243.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DEH83_RS02025 (DEH83_02005) - 416528..417085 (-) 558 WP_003070172.1 YutD family protein -
  DEH83_RS02030 (DEH83_02010) sepM 417372..418427 (-) 1056 WP_070669255.1 SepM family pheromone-processing serine protease Regulator
  DEH83_RS02035 (DEH83_02015) coaD 418408..418905 (-) 498 WP_003070176.1 pantetheine-phosphate adenylyltransferase -
  DEH83_RS02040 (DEH83_02020) rsmD 418895..419443 (-) 549 WP_186821957.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence


Protein


Download         Length: 224 a.a.        Molecular weight: 25241.57 Da        Isoelectric Point: 8.3081

>NTDB_id=291160 DEH83_RS02010 WP_255776935.1 414232..414906(+) (cclA/cilC) [Streptococcus constellatus strain TCV107]
MIHFYFFLVGSIVASFLGLVVDRFPEQSIITPASHCNVCGQKLAPRDLIPVLSQLINRLRCRFCNSKIPIRYILLELTGG
CLFLVTSLGYLNINRLVLLAMGMTLSLYDQREQEYPLLIWLIFHIFLLFLTSFNLLMVAFLALGILAHFVDLRIGAGDFL
FLASCSTIFHLTEVLLIIQIASIIGLLLFGLKSKKDRLAFVPCLFCGSSILIMIQFIVLHQNAL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=291160 DEH83_RS02010 WP_255776935.1 414232..414906(+) (cclA/cilC) [Streptococcus constellatus strain TCV107]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGTATTGTAGCTTCCTTTTTAGGACTGGTCGTTGATCGCTTTCCTGAACA
GTCTATTATCACACCTGCTAGTCATTGCAACGTTTGTGGACAGAAATTAGCACCTCGTGATTTAATTCCTGTTCTTTCAC
AGCTTATCAATCGGCTGCGTTGCCGTTTTTGCAACTCAAAAATTCCCATCCGTTACATCCTTCTAGAACTAACTGGTGGT
TGTCTCTTTCTTGTAACGTCTTTAGGCTATCTAAACATCAACCGGCTCGTTTTGCTTGCAATGGGAATGACCTTATCCCT
TTATGATCAAAGAGAACAAGAATATCCTCTCCTCATCTGGTTAATCTTTCATATTTTTCTCCTTTTTTTGACAAGCTTCA
ATCTTTTAATGGTTGCTTTTTTAGCACTTGGGATTTTGGCTCACTTCGTTGATTTACGTATCGGTGCAGGAGACTTTCTT
TTTCTGGCATCTTGCTCAACTATTTTTCATCTGACTGAAGTTCTTCTCATTATTCAAATTGCTAGTATCATTGGTCTGCT
CCTTTTTGGTTTAAAATCAAAAAAAGACAGGTTAGCCTTTGTTCCCTGTCTTTTCTGTGGTAGCAGCATCCTGATAATGA
TACAATTTATCGTTCTTCACCAAAATGCCTTATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

58.491

94.643

0.554

  cclA/cilC Streptococcus mitis NCTC 12261

57.547

94.643

0.545

  cclA/cilC Streptococcus pneumoniae TIGR4

57.547

94.643

0.545

  cclA/cilC Streptococcus pneumoniae Rx1

57.075

94.643

0.54

  cclA/cilC Streptococcus pneumoniae D39

57.075

94.643

0.54

  cclA/cilC Streptococcus pneumoniae R6

57.075

94.643

0.54


Multiple sequence alignment