Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SGO_RS10530 Genome accession   NC_009785
Coordinates   2195861..2196625 (+) Length   254 a.a.
NCBI ID   WP_012131082.1    Uniprot ID   -
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2190861..2201625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS10500 (SGO_2145) comE/comE1 2191350..2192117 (-) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  SGO_RS10505 (SGO_2146) comD/comD1 2192114..2193475 (-) 1362 WP_012131078.1 competence system sensor histidine kinase ComD Regulator
  SGO_RS10510 (SGO_2147) comC/comC1 2193491..2193643 (-) 153 WP_012131079.1 bacteriocin Regulator
  SGO_RS10520 (SGO_2149) rlmH 2193929..2194408 (-) 480 WP_012131080.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SGO_RS10525 (SGO_2150) htrA 2194602..2195795 (+) 1194 WP_012131081.1 S1C family serine protease Regulator
  SGO_RS10530 (SGO_2151) spo0J 2195861..2196625 (+) 765 WP_012131082.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29310.99 Da        Isoelectric Point: 9.3146

>NTDB_id=29107 SGO_RS10530 WP_012131082.1 2195861..2196625(+) (spo0J) [Streptococcus gordonii str. Challis substr. CH1]
MENYQYILIKDIHTNPYQPRKDFSIEKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQNLIYKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKAVKEGHISQAHA
RLLIKLKEKDQRKWLENIISSDISVRKLEKLLQTSPIKSKSENVQKIFIEEEEENLKKLLGVEVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=29107 SGO_RS10530 WP_012131082.1 2195861..2196625(+) (spo0J) [Streptococcus gordonii str. Challis substr. CH1]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAATCCCTATCAACCAAGAAAAGATTTTTCAATAGAGAA
ATTAAACGAGTTAGCAAATTCTATTAAAGAAAACGGATTAATTCAGCCTATTATTGTTAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGAAGATTTAGGGCAGCTAAAATAGCAGGTTTAACTGAAATTCCTGCCTTAGTAAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAGAATCTTATTTACAAGGGATTAACGCATGATGAAATCGCTCAAATCATGGGAAAATCGAGACCTTATATTA
CTAATCTTGTTCGCTTGCTACAGCTACCTGATTTTGTCTTAAAAGCTGTAAAAGAGGGTCATATTTCTCAAGCTCATGCT
CGGTTACTAATAAAACTCAAGGAAAAAGACCAGAGAAAATGGCTTGAAAATATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAAAAATTATTACAGACTTCTCCTATTAAGTCCAAGTCTGAAAATGTCCAAAAAATTTTTATAGAGGAAGAAGAAG
AAAACCTAAAGAAATTATTGGGAGTCGAAGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

53.937

100

0.539

Multiple sequence alignment