Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DEF76_RS00915 Genome accession   NZ_CP029176
Coordinates   203309..203785 (+) Length   158 a.a.
NCBI ID   WP_114910719.1    Uniprot ID   -
Organism   Acidibrevibacterium fodinaquatile strain G45-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 198309..208785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEF76_RS00905 - 198818..200245 (-) 1428 WP_114913574.1 NAD(P)/FAD-dependent oxidoreductase -
  DEF76_RS00910 uvrA 200247..203132 (-) 2886 WP_114910718.1 excinuclease ABC subunit UvrA -
  DEF76_RS00915 ssb 203309..203785 (+) 477 WP_114910719.1 single-stranded DNA-binding protein Machinery gene
  DEF76_RS00920 gyrA 203793..206606 (+) 2814 WP_114910720.1 DNA gyrase subunit A -
  DEF76_RS00925 coaD 206599..207123 (+) 525 WP_114910721.1 pantetheine-phosphate adenylyltransferase -
  DEF76_RS00930 - 207203..207715 (+) 513 WP_114913575.1 peptidylprolyl isomerase -
  DEF76_RS19150 - 207830..208096 (-) 267 WP_162800419.1 hypothetical protein -
  DEF76_RS00940 - 208258..208665 (-) 408 WP_114910722.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17519.51 Da        Isoelectric Point: 6.0023

>NTDB_id=290983 DEF76_RS00915 WP_114910719.1 203309..203785(+) (ssb) [Acidibrevibacterium fodinaquatile strain G45-3]
MAGSVNKVILIGNLGRDPEVRNTQDGTKIVNFTLATSETWNDRASGERKERTEWHRVVIFNERLADVAERYLRKGSKVYV
EGALQTRKWTDQSGQEKYTTEVVLTRFRGELTMLDGRAAEGGEARGAPAPRAEKASTGGRPATAWEPPAGDLDDEIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=290983 DEF76_RS00915 WP_114910719.1 203309..203785(+) (ssb) [Acidibrevibacterium fodinaquatile strain G45-3]
ATGGCTGGCAGTGTGAACAAGGTGATTTTGATCGGCAATCTCGGCCGCGATCCGGAAGTGCGGAACACGCAGGACGGCAC
GAAGATCGTCAATTTCACGCTCGCGACCAGCGAGACCTGGAACGATCGCGCCTCCGGCGAGCGCAAGGAGCGCACCGAGT
GGCACCGGGTGGTGATTTTCAACGAACGCCTCGCCGATGTCGCCGAGCGCTATCTGCGCAAAGGGAGCAAGGTCTATGTC
GAGGGCGCGTTGCAGACCCGCAAATGGACCGACCAGAGCGGCCAGGAAAAATACACCACCGAAGTGGTGCTGACCCGTTT
CCGCGGCGAACTCACCATGCTCGATGGCCGCGCCGCCGAGGGCGGCGAGGCGCGAGGCGCGCCGGCGCCGCGGGCGGAGA
AGGCGAGCACGGGCGGCCGCCCGGCGACCGCCTGGGAGCCGCCGGCCGGCGACCTCGACGACGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

100

0.57
  ssb Glaesserella parasuis strain SC1401

45.989

100

0.544
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.475
  ssb Neisseria meningitidis MC58

40.556

100

0.462

Multiple sequence alignment