Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AYP37_RS09940 Genome accession   NZ_CP034797
Coordinates   1777585..1778100 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 08-3918     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772585..1783100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP37_RS09915 ygaZ 1772984..1773721 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AYP37_RS09920 ygaH 1773711..1774046 (+) 336 WP_000119747.1 L-valine transporter subunit YgaH -
  AYP37_RS09925 emrR 1774137..1774667 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AYP37_RS09930 emrA 1774794..1775966 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AYP37_RS09935 emrB 1775983..1777521 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AYP37_RS09940 luxS 1777585..1778100 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  AYP37_RS09945 gshA 1778250..1779806 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  AYP37_RS09950 yqaA 1779879..1780307 (-) 429 WP_001287450.1 YqaA family protein -
  AYP37_RS09955 yqaB 1780304..1780870 (-) 567 WP_000273311.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AYP37_RS09985 csrA 1782098..1782283 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=290983 AYP37_RS09940 WP_001130215.1 1777585..1778100(-) (luxS) [Escherichia coli strain 08-3918]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=290983 AYP37_RS09940 WP_001130215.1 1777585..1778100(-) (luxS) [Escherichia coli strain 08-3918]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment