Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGO_RS09205 Genome accession   NC_009785
Coordinates   1956659..1957150 (-) Length   163 a.a.
NCBI ID   WP_012130902.1    Uniprot ID   A0AAP2K452
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1954819..1962967 1956659..1957150 within 0


Gene organization within MGE regions


Location: 1954819..1962967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS09190 (SGO_1877) - 1954819..1955532 (-) 714 WP_012130900.1 ABC transporter ATP-binding protein -
  SGO_RS09195 (SGO_1878) - 1955673..1956329 (-) 657 WP_080512843.1 TetR/AcrR family transcriptional regulator -
  SGO_RS09200 (SGO_1879) rpsR 1956381..1956620 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SGO_RS09205 (SGO_1880) ssb 1956659..1957150 (-) 492 WP_012130902.1 single-stranded DNA-binding protein Machinery gene
  SGO_RS09210 (SGO_1881) rpsF 1957167..1957457 (-) 291 WP_001151775.1 30S ribosomal protein S6 -
  SGO_RS09215 (SGO_1882) folE 1957670..1958233 (+) 564 WP_012130903.1 GTP cyclohydrolase I FolE -
  SGO_RS09220 (SGO_1883) - 1958281..1959102 (+) 822 WP_012130904.1 PrsW family intramembrane metalloprotease -
  SGO_RS09225 (SGO_1884) - 1959196..1959954 (-) 759 WP_012130905.1 epoxyqueuosine reductase QueH -
  SGO_RS09230 (SGO_1885) groL 1960078..1961700 (-) 1623 WP_012130906.1 chaperonin GroEL -
  SGO_RS09235 (SGO_1886) groES 1961723..1962004 (-) 282 WP_012130907.1 co-chaperone GroES -
  SGO_RS09240 (SGO_1887) - 1962164..1962967 (-) 804 WP_008810030.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18152.89 Da        Isoelectric Point: 5.2060

>NTDB_id=29098 SGO_RS09205 WP_012130902.1 1956659..1957150(-) (ssb) [Streptococcus gordonii str. Challis substr. CH1]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNHNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTSREGQSGGYTPNNFGGNAAPSFGGADSSHQVPNFSRDENPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=29098 SGO_RS09205 WP_012130902.1 1956659..1957150(-) (ssb) [Streptococcus gordonii str. Challis substr. CH1]
ATGATAAATAACGTTGTACTTGTAGGTCGCATGACCCGCGATGCTGAACTACGCTATACACCGCAAAACCAAGCGGTTGC
AACATTTACATTAGCTGTTAATCGTAATTTCAAAAACCATAATGGTGAAAGAGAAGCAGACTTTATCAATGTTGTCATTT
GGCGTCAGCAGGCAGAAAATCTTGCAAACTGGGCTAAAAAAGGTGCTCTAGTCGGAATTACAGGTCGTATTCAGACCCGT
AATTATGAAAATCAGCAAGGTCAACGTGTCTACGTCACTGAGGTCGTTGCAGACAACTTCCAACTATTGGAAAGTCGTAC
AAGCCGTGAAGGACAGTCTGGAGGCTATACTCCAAATAACTTTGGCGGTAATGCAGCACCAAGCTTCGGAGGCGCTGACT
CGTCTCACCAAGTACCGAATTTTTCTCGTGATGAGAATCCATTTGGTAACTCAAATCCAATGGATATCTCAGATGATGAT
CTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.626
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

66.871

0.362

Multiple sequence alignment