Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A1D74_RS25140 Genome accession   NZ_CP034794
Coordinates   4882897..4883433 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 06-3462     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4877897..4888433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D74_RS25120 aphA 4878185..4878898 (+) 714 WP_001226923.1 acid phosphatase AphA -
  A1D74_RS25125 yjbQ 4879009..4879425 (+) 417 WP_096963967.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  A1D74_RS25130 yjbR 4879429..4879785 (+) 357 WP_000155652.1 MmcQ/YjbR family DNA-binding protein -
  A1D74_RS25135 uvrA 4879820..4882642 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  A1D74_RS25140 ssb 4882897..4883433 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  A1D74_RS25145 yjcB 4883532..4883813 (-) 282 WP_001295689.1 YjcB family protein -
  A1D74_RS25150 pdeC 4884242..4885828 (+) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  A1D74_RS25155 soxS 4885831..4886154 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  A1D74_RS25160 soxR 4886240..4886704 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=290957 A1D74_RS25140 WP_000168305.1 4882897..4883433(+) (ssb) [Escherichia coli strain 06-3462]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=290957 A1D74_RS25140 WP_000168305.1 4882897..4883433(+) (ssb) [Escherichia coli strain 06-3462]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489