Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   DD562_RS03490 Genome accession   NZ_CP029172
Coordinates   670047..670616 (+) Length   189 a.a.
NCBI ID   WP_000872879.1    Uniprot ID   A0A2S6DF07
Organism   Staphylococcus aureus strain PTDrAP2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 665047..675616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD562_RS03465 (DD562_03465) cysE 666259..666906 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  DD562_RS03470 (DD562_03470) cysS 666890..668290 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  DD562_RS03475 (DD562_03475) - 668283..668687 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  DD562_RS03480 (DD562_03480) rlmB 668695..669441 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DD562_RS03485 (DD562_03485) - 669441..669965 (+) 525 WP_000664738.1 NYN domain-containing protein -
  DD562_RS03490 (DD562_03490) sigH 670047..670616 (+) 570 WP_000872879.1 sigma-70 family RNA polymerase sigma factor Regulator
  DD562_RS03495 (DD562_03495) rpmG 670731..670874 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  DD562_RS03500 (DD562_03500) secE 670930..671112 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  DD562_RS03505 (DD562_03505) nusG 671125..671673 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  DD562_RS03510 (DD562_03510) rplK 671854..672276 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  DD562_RS03515 (DD562_03515) rplA 672484..673176 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  DD562_RS03525 (DD562_03525) rplJ 673448..673948 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  DD562_RS03530 (DD562_03530) rplL 673991..674359 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  DD562_RS03535 (DD562_03535) - 674534..675142 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.02 Da        Isoelectric Point: 9.7681

>NTDB_id=290904 DD562_RS03490 WP_000872879.1 670047..670616(+) (sigH) [Staphylococcus aureus strain PTDrAP2]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=290904 DD562_RS03490 WP_000872879.1 670047..670616(+) (sigH) [Staphylococcus aureus strain PTDrAP2]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DF07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment