Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DD562_RS02620 Genome accession   NZ_CP029172
Coordinates   505309..505812 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain PTDrAP2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 500309..510812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD562_RS02585 (DD562_02585) - 501249..502094 (+) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein -
  DD562_RS02590 (DD562_02590) - 502248..503129 (+) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  DD562_RS02595 (DD562_02595) - 503159..503362 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  DD562_RS02600 (DD562_02600) ychF 503374..504471 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  DD562_RS02605 (DD562_02605) - 504557..504748 (-) 192 WP_001052481.1 hypothetical protein -
  DD562_RS02615 (DD562_02615) rpsF 504992..505288 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  DD562_RS02620 (DD562_02620) ssbA 505309..505812 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  DD562_RS02625 (DD562_02625) rpsR 505864..506106 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  DD562_RS15275 - 506343..506570 (-) 228 Protein_486 Abi family protein -
  DD562_RS15065 - 506563..506839 (-) 277 Protein_487 site-specific integrase -
  DD562_RS02635 (DD562_02635) - 506918..507232 (+) 315 Protein_488 exotoxin beta-grasp domain-containing protein -
  DD562_RS02640 (DD562_02640) - 507598..507966 (+) 369 WP_000849160.1 YxeA family protein -
  DD562_RS02645 (DD562_02645) - 508146..508718 (+) 573 WP_000769718.1 PepSY domain-containing protein -
  DD562_RS02650 (DD562_02650) - 508856..509119 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  DD562_RS02655 (DD562_02655) - 509413..509664 (+) 252 WP_000466741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DD562_RS02660 (DD562_02660) - 509706..509914 (-) 209 Protein_493 hypothetical protein -
  DD562_RS02665 (DD562_02665) - 510092..510673 (+) 582 WP_000158385.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=290901 DD562_RS02620 WP_000934799.1 505309..505812(+) (ssbA) [Staphylococcus aureus strain PTDrAP2]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=290901 DD562_RS02620 WP_000934799.1 505309..505812(+) (ssbA) [Staphylococcus aureus strain PTDrAP2]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment