Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DD681_RS00310 | Genome accession | NZ_CP029161 |
| Coordinates | 56821..57327 (+) | Length | 168 a.a. |
| NCBI ID | WP_158341044.1 | Uniprot ID | - |
| Organism | Buchnera aphidicola (Melanaphis sacchari) strain LSU | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 51821..62327
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DD681_RS00290 (DD681_00290) | - | 52484..53179 (-) | 696 | WP_158341040.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| DD681_RS00295 (DD681_00295) | ruvX | 53214..53624 (-) | 411 | WP_158341041.1 | Holliday junction resolvase RuvX | - |
| DD681_RS00300 (DD681_00300) | gshB | 53626..54600 (-) | 975 | WP_158341042.1 | glutathione synthase | - |
| DD681_RS00305 (DD681_00305) | dnaB | 54699..56096 (-) | 1398 | WP_158341043.1 | replicative DNA helicase | - |
| DD681_RS00310 (DD681_00310) | ssb | 56821..57327 (+) | 507 | WP_158341044.1 | single-stranded DNA-binding protein | Machinery gene |
| DD681_RS00315 (DD681_00315) | bioH | 57389..58165 (-) | 777 | WP_158341045.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| DD681_RS00320 (DD681_00320) | - | 58275..58886 (+) | 612 | WP_158341046.1 | NfuA family Fe-S biogenesis protein | - |
| DD681_RS00325 (DD681_00325) | - | 59434..61029 (+) | 1596 | WP_158341047.1 | peptide chain release factor 3 | - |
| DD681_RS00330 (DD681_00330) | - | 61087..62319 (+) | 1233 | WP_158341048.1 | phosphopentomutase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19056.21 Da Isoelectric Point: 6.1109
>NTDB_id=290829 DD681_RS00310 WP_158341044.1 56821..57327(+) (ssb) [Buchnera aphidicola (Melanaphis sacchari) strain LSU]
MASRGINKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRHSNSNNISVNENNANLSKKIDSDQSLKNIDNFKSEKEKNHSSDI
DFDDEIPF
MASRGINKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRHSNSNNISVNENNANLSKKIDSDQSLKNIDNFKSEKEKNHSSDI
DFDDEIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=290829 DD681_RS00310 WP_158341044.1 56821..57327(+) (ssb) [Buchnera aphidicola (Melanaphis sacchari) strain LSU]
ATGGCAAGTAGAGGTATTAATAAAGTAATTTTAATTGGTCATTTAGGTCAAGATCCTGAAGTTCGTTATATGCCCAATGG
TAATGCAGTAGTGAATATGACCCTTGCGACTTCAGAGAATTGGAAAGATAAAAATACTGGTGAAAATAAAGAAAAAACTG
AATGGCATAGAATAGTATTATTTGGAAAATTAGCAGAAATTGCAGGAGAATATCTTCGTAAAGGCTCTCAGGTATATATT
GAAGGATCTCTTCAGACAAGAAAATGGCAAGACCAAAACGGCCTTGAAAGATACACGACTGAAGTGATAGTTAATATTGG
TGGAACCATGCAAATGCTAGGTAATCGCCATTCTAATTCAAATAATATTTCTGTTAATGAAAATAATGCTAATCTTTCAA
AAAAAATAGATTCAGATCAATCATTGAAAAATATAGACAATTTTAAATCAGAAAAAGAAAAAAATCATTCTTCTGATATT
GATTTTGATGATGAAATACCCTTTTAA
ATGGCAAGTAGAGGTATTAATAAAGTAATTTTAATTGGTCATTTAGGTCAAGATCCTGAAGTTCGTTATATGCCCAATGG
TAATGCAGTAGTGAATATGACCCTTGCGACTTCAGAGAATTGGAAAGATAAAAATACTGGTGAAAATAAAGAAAAAACTG
AATGGCATAGAATAGTATTATTTGGAAAATTAGCAGAAATTGCAGGAGAATATCTTCGTAAAGGCTCTCAGGTATATATT
GAAGGATCTCTTCAGACAAGAAAATGGCAAGACCAAAACGGCCTTGAAAGATACACGACTGAAGTGATAGTTAATATTGG
TGGAACCATGCAAATGCTAGGTAATCGCCATTCTAATTCAAATAATATTTCTGTTAATGAAAATAATGCTAATCTTTCAA
AAAAAATAGATTCAGATCAATCATTGAAAAATATAGACAATTTTAAATCAGAAAAAGAAAAAAATCATTCTTCTGATATT
GATTTTGATGATGAAATACCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.932 |
100 |
0.589 |
| ssb | Glaesserella parasuis strain SC1401 |
44.751 |
100 |
0.482 |
| ssb | Neisseria meningitidis MC58 |
43.75 |
100 |
0.458 |
| ssb | Neisseria gonorrhoeae MS11 |
43.182 |
100 |
0.452 |