Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3363_RS05305 Genome accession   NZ_CP029150
Coordinates   1097744..1098286 (+) Length   180 a.a.
NCBI ID   WP_010786780.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GZ20170512     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1092744..1103286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3363_RS05290 (C3363_05285) - 1094069..1094320 (-) 252 WP_010786783.1 LysR substrate-binding domain-containing protein -
  C3363_RS05295 (C3363_05290) - 1094286..1094666 (-) 381 WP_010786782.1 YacL family protein -
  C3363_RS05300 (C3363_05295) uvrA 1094750..1097578 (-) 2829 WP_021115957.1 excinuclease ABC subunit UvrA -
  C3363_RS05305 (C3363_05300) ssb 1097744..1098286 (+) 543 WP_010786780.1 single-stranded DNA-binding protein Machinery gene
  C3363_RS05310 (C3363_05305) - 1098492..1099706 (+) 1215 WP_010786779.1 ATP-binding protein -
  C3363_RS05315 (C3363_05310) - 1099778..1100086 (-) 309 Protein_1032 helicase HerA-like domain-containing protein -
  C3363_RS05320 (C3363_05315) rhlB 1100096..1101316 (-) 1221 WP_005712618.1 ATP-dependent RNA helicase RhlB -
  C3363_RS05325 (C3363_05320) - 1101380..1101652 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  C3363_RS05330 (C3363_05325) - 1101663..1101941 (-) 279 WP_010786777.1 type II toxin-antitoxin system RelE/ParE family toxin -
  C3363_RS05335 (C3363_05330) argF 1102088..1103098 (+) 1011 WP_005712612.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19968.81 Da        Isoelectric Point: 4.9833

>NTDB_id=290762 C3363_RS05305 WP_010786780.1 1097744..1098286(+) (ssb) [Glaesserella parasuis strain GZ20170512]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGSYNDSYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=290762 C3363_RS05305 WP_010786780.1 1097744..1098286(+) (ssb) [Glaesserella parasuis strain GZ20170512]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTGTTCTTCCGCCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCAGCTACAACGACAGCTATGCTCAAAATAACAACTTCAACGGAGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

98.333

100

0.983
  ssb Vibrio cholerae strain A1552

50.794

100

0.533
  ssb Neisseria meningitidis MC58

45.055

100

0.456
  ssb Neisseria gonorrhoeae MS11

45.055

100

0.456

Multiple sequence alignment