Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C3363_RS03345 Genome accession   NZ_CP029150
Coordinates   675846..676523 (+) Length   225 a.a.
NCBI ID   WP_010785957.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GZ20170512     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670846..681523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3363_RS03330 (C3363_03355) aroB 671283..672371 (-) 1089 WP_021110495.1 3-dehydroquinate synthase -
  C3363_RS03335 (C3363_03360) aroK 672386..672907 (-) 522 WP_015940157.1 shikimate kinase AroK -
  C3363_RS03340 (C3363_03365) - 673137..675692 (-) 2556 WP_159179850.1 penicillin-binding protein 1A -
  C3363_RS03345 (C3363_03370) comA 675846..676523 (+) 678 WP_010785957.1 hypothetical protein Machinery gene
  C3363_RS03350 (C3363_03375) comB 676499..677020 (+) 522 WP_010785956.1 hypothetical protein Machinery gene
  C3363_RS03355 (C3363_03380) comC 677017..677547 (+) 531 WP_015940159.1 hypothetical protein Machinery gene
  C3363_RS03360 (C3363_03385) comD 677592..677933 (+) 342 WP_232422128.1 hypothetical protein Machinery gene
  C3363_RS03365 (C3363_03390) comE 677943..679205 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  C3363_RS03370 (C3363_03395) nusB 679284..679697 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  C3363_RS03375 (C3363_03400) thiL 679706..680674 (+) 969 WP_021110497.1 thiamine-phosphate kinase -
  C3363_RS03380 (C3363_03405) - 680677..681147 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26345.38 Da        Isoelectric Point: 7.5337

>NTDB_id=290755 C3363_RS03345 WP_010785957.1 675846..676523(+) (comA) [Glaesserella parasuis strain GZ20170512]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSNKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYRITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKITETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHFPHFYPYLIALGASLWNGKVSI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=290755 C3363_RS03345 WP_010785957.1 675846..676523(+) (comA) [Glaesserella parasuis strain GZ20170512]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAGCAAGAACAACCTCACACCTTTTACTTTTCAAACAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATCTGGCGAAAAACCTTGATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCGTATCACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCTCTAAGAAAAAGCAACAGCTTTG
ACCCAACGGCTATTTTAGATTGCGAACTCTACTGCCTACTACGAGCGGTAGGATTTCTGACAAAAATAACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACACTTTCCCCATTTTTATCCTTATCTTATTGCAT
TAGGAGCAAGTTTATGGAATGGCAAGGTATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

97.778

100

0.978

Multiple sequence alignment