Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | C3363_RS03360 | Genome accession | NZ_CP029150 |
| Coordinates | 677592..677933 (+) | Length | 113 a.a. |
| NCBI ID | WP_232422128.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain GZ20170512 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 672592..682933
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3363_RS03340 (C3363_03365) | - | 673137..675692 (-) | 2556 | WP_159179850.1 | penicillin-binding protein 1A | - |
| C3363_RS03345 (C3363_03370) | comA | 675846..676523 (+) | 678 | WP_010785957.1 | hypothetical protein | Machinery gene |
| C3363_RS03350 (C3363_03375) | comB | 676499..677020 (+) | 522 | WP_010785956.1 | hypothetical protein | Machinery gene |
| C3363_RS03355 (C3363_03380) | comC | 677017..677547 (+) | 531 | WP_015940159.1 | hypothetical protein | Machinery gene |
| C3363_RS03360 (C3363_03385) | comD | 677592..677933 (+) | 342 | WP_232422128.1 | hypothetical protein | Machinery gene |
| C3363_RS03365 (C3363_03390) | comE | 677943..679205 (+) | 1263 | WP_026917118.1 | type IV pilus secretin PilQ | Machinery gene |
| C3363_RS03370 (C3363_03395) | nusB | 679284..679697 (+) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| C3363_RS03375 (C3363_03400) | thiL | 679706..680674 (+) | 969 | WP_021110497.1 | thiamine-phosphate kinase | - |
| C3363_RS03380 (C3363_03405) | - | 680677..681147 (+) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| C3363_RS03385 (C3363_03410) | - | 681149..681778 (+) | 630 | WP_015940164.1 | LysE family transporter | - |
| C3363_RS03390 (C3363_03415) | trxA | 682075..682389 (+) | 315 | WP_015940165.1 | thioredoxin | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 13176.92 Da Isoelectric Point: 5.1438
>NTDB_id=290758 C3363_RS03360 WP_232422128.1 677592..677933(+) (comD) [Glaesserella parasuis strain GZ20170512]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYINWQKTENCQSPKLFTSKF
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYINWQKTENCQSPKLFTSKF
Nucleotide
Download Length: 342 bp
>NTDB_id=290758 C3363_RS03360 WP_232422128.1 677592..677933(+) (comD) [Glaesserella parasuis strain GZ20170512]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATCCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTAATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATCCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTAATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Glaesserella parasuis strain SC1401 |
93.805 |
100 |
0.938 |