Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRG85_RS08795 Genome accession   NZ_CP034787
Coordinates   1824344..1824820 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain ECCNB20-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819344..1829820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRG85_RS08745 (CRG85_08745) sbmC 1819837..1820310 (+) 474 WP_029402285.1 DNA gyrase inhibitor SbmC -
  CRG85_RS08750 (CRG85_08750) yeeA 1820508..1821566 (+) 1059 WP_001200905.1 FUSC family protein -
  CRG85_RS08755 (CRG85_08755) tmaR 1821738..1822067 (+) 330 WP_000450409.1 DUF496 family protein -
  CRG85_RS08760 (CRG85_08760) - 1822168..1822350 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CRG85_RS08765 (CRG85_08765) - 1822404..1822550 (+) 147 Protein_1702 transposase domain-containing protein -
  CRG85_RS08770 (CRG85_08770) - 1822839..1822919 (-) 81 Protein_1703 hypothetical protein -
  CRG85_RS08775 (CRG85_08775) yeeW 1822965..1823159 (-) 195 WP_000988599.1 DUF5983 family protein -
  CRG85_RS08780 (CRG85_08780) cbtA 1823156..1823529 (-) 374 Protein_1705 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CRG85_RS08785 (CRG85_08785) cbeA 1823618..1823986 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CRG85_RS08790 (CRG85_08790) yeeT 1824060..1824281 (-) 222 WP_104769268.1 DUF987 domain-containing protein -
  CRG85_RS08795 (CRG85_08795) radC 1824344..1824820 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CRG85_RS08800 (CRG85_08800) - 1824836..1825315 (-) 480 WP_000860076.1 antirestriction protein -
  CRG85_RS08805 (CRG85_08805) - 1825397..1826218 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  CRG85_RS08815 (CRG85_08815) - 1826439..1826849 (-) 411 WP_000846713.1 hypothetical protein -
  CRG85_RS08820 (CRG85_08820) - 1826865..1827548 (-) 684 WP_000775500.1 hypothetical protein -
  CRG85_RS08825 (CRG85_08825) - 1827684..1828754 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CRG85_RS08830 (CRG85_08830) - 1828751..1829218 (-) 468 WP_113387936.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=290758 CRG85_RS08795 WP_001186773.1 1824344..1824820(-) (radC) [Escherichia coli strain ECCNB20-2]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=290758 CRG85_RS08795 WP_001186773.1 1824344..1824820(-) (radC) [Escherichia coli strain ECCNB20-2]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment