Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CRG85_RS08735 Genome accession   NZ_CP034787
Coordinates   1816916..1818343 (-) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain ECCNB20-2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1811916..1823343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRG85_RS08705 (CRG85_08705) yeeZ 1811971..1812795 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  CRG85_RS08710 (CRG85_08710) yeeY 1812841..1813770 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CRG85_RS08715 (CRG85_08715) yoeI 1813985..1814047 (+) 63 WP_010723108.1 membrane protein YoeI -
  CRG85_RS08720 (CRG85_08720) plaP 1814037..1815395 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CRG85_RS08725 (CRG85_08725) tsuA 1815574..1816632 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  CRG85_RS08730 (CRG85_08730) tsuB 1816646..1816873 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CRG85_RS08735 (CRG85_08735) sbcB 1816916..1818343 (-) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  CRG85_RS08740 (CRG85_08740) dacD 1818552..1819718 (+) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CRG85_RS08745 (CRG85_08745) sbmC 1819837..1820310 (+) 474 WP_029402285.1 DNA gyrase inhibitor SbmC -
  CRG85_RS08750 (CRG85_08750) yeeA 1820508..1821566 (+) 1059 WP_001200905.1 FUSC family protein -
  CRG85_RS08755 (CRG85_08755) tmaR 1821738..1822067 (+) 330 WP_000450409.1 DUF496 family protein -
  CRG85_RS08760 (CRG85_08760) - 1822168..1822350 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CRG85_RS08765 (CRG85_08765) - 1822404..1822550 (+) 147 Protein_1702 transposase domain-containing protein -
  CRG85_RS08770 (CRG85_08770) - 1822839..1822919 (-) 81 Protein_1703 hypothetical protein -
  CRG85_RS08775 (CRG85_08775) yeeW 1822965..1823159 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=290757 CRG85_RS08735 WP_000980592.1 1816916..1818343(-) (sbcB) [Escherichia coli strain ECCNB20-2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=290757 CRG85_RS08735 WP_000980592.1 1816916..1818343(-) (sbcB) [Escherichia coli strain ECCNB20-2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment