Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SGO_RS03270 Genome accession   NC_009785
Coordinates   708655..709317 (-) Length   220 a.a.
NCBI ID   WP_012000141.1    Uniprot ID   A8AW07
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703655..714317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS03240 (SGO_0658) - 703785..704348 (+) 564 WP_012000135.1 aminodeoxychorismate/anthranilate synthase component II -
  SGO_RS03245 (SGO_0659) trpD 704359..705363 (+) 1005 WP_012000136.1 anthranilate phosphoribosyltransferase -
  SGO_RS03250 (SGO_0660) trpC 705360..706127 (+) 768 WP_012000137.1 indole-3-glycerol phosphate synthase TrpC -
  SGO_RS03255 (SGO_0661) - 706114..706701 (+) 588 WP_012000138.1 phosphoribosylanthranilate isomerase -
  SGO_RS03260 (SGO_0662) trpB 706691..707914 (+) 1224 WP_012000139.1 tryptophan synthase subunit beta -
  SGO_RS03265 (SGO_0663) trpA 707907..708686 (+) 780 WP_012000140.1 tryptophan synthase subunit alpha -
  SGO_RS03270 (SGO_0664) cclA/cilC 708655..709317 (-) 663 WP_012000141.1 prepilin peptidase Machinery gene
  SGO_RS03275 (SGO_0665) - 709486..710001 (+) 516 WP_008809115.1 Dps family protein -
  SGO_RS03280 (SGO_0666) - 710179..710403 (+) 225 WP_041789586.1 YqgQ family protein -
  SGO_RS03285 (SGO_0667) - 710391..710777 (+) 387 WP_008809113.1 rhodanese-like domain-containing protein -
  SGO_RS03290 (SGO_0668) - 710943..711668 (-) 726 WP_012000143.1 16S rRNA pseudouridine(516) synthase -
  SGO_RS03295 (SGO_0669) typA 711850..713697 (+) 1848 WP_012000144.1 translational GTPase TypA -
  SGO_RS03300 (SGO_0670) - 713721..713999 (+) 279 WP_012000145.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24731.17 Da        Isoelectric Point: 8.6451

>NTDB_id=29066 SGO_RS03270 WP_012000141.1 708655..709317(-) (cclA/cilC) [Streptococcus gordonii str. Challis substr. CH1]
MIHLYFFLVGTVFASFLGLVIDRFPEQSIITPASHCNACGKRLAPRDLIPIVSQVLNRLRCRFCGDKIPLRYLFFECIFG
CLFLATSLGTISISQLLLLTMGITLAIYDQRELQYPLMIWLVFQLLLLMISGINLLILFFLALGLLAFFYNLRIGAGDFL
FLASCSAIFSLTEILILIQIASFSGLACFCFKKKKDRLAFVPCLLFGVVVIISYKLLLLG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=29066 SGO_RS03270 WP_012000141.1 708655..709317(-) (cclA/cilC) [Streptococcus gordonii str. Challis substr. CH1]
ATGATTCACCTATACTTTTTTCTTGTTGGTACCGTCTTTGCCTCATTCCTAGGCTTGGTCATCGACCGCTTCCCAGAGCA
GTCTATCATCACACCAGCTAGTCATTGTAATGCCTGTGGGAAAAGACTGGCCCCTCGTGACTTGATTCCTATTGTTTCCC
AAGTCTTGAACCGTCTTCGCTGTCGCTTCTGTGGAGACAAGATTCCCTTACGTTATTTATTTTTTGAATGTATCTTTGGC
TGTCTTTTTCTGGCCACTTCACTTGGTACAATTTCTATCAGTCAACTCCTGCTACTTACCATGGGCATAACGTTGGCCAT
ATATGATCAAAGAGAGCTGCAATACCCCTTAATGATCTGGTTAGTTTTTCAGCTCTTGTTGCTAATGATATCGGGCATCA
ATCTTCTCATACTCTTCTTTTTAGCCCTAGGACTTCTAGCCTTCTTTTATAATCTTCGTATTGGAGCTGGTGACTTTCTT
TTTCTTGCTTCCTGCTCAGCCATTTTTAGTCTGACGGAAATTCTCATTCTTATCCAAATCGCTAGCTTCTCTGGCCTCGC
CTGTTTCTGCTTTAAAAAGAAAAAAGACAGGCTGGCATTTGTACCCTGTCTTTTGTTTGGTGTGGTGGTGATTATTTCTT
ATAAGCTGCTGCTTCTTGGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AW07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

59.361

99.545

0.591
  cclA/cilC Streptococcus mitis SK321

58.904

99.545

0.586
  cclA/cilC Streptococcus pneumoniae Rx1

57.991

99.545

0.577
  cclA/cilC Streptococcus pneumoniae D39

57.991

99.545

0.577
  cclA/cilC Streptococcus pneumoniae R6

57.991

99.545

0.577
  cclA/cilC Streptococcus pneumoniae TIGR4

57.534

99.545

0.573

Multiple sequence alignment