Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SGO_RS03000 Genome accession   NC_009785
Coordinates   659579..660244 (+) Length   221 a.a.
NCBI ID   WP_012000103.1    Uniprot ID   A8AVW5
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654579..665244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS02975 (SGO_0604) - 654743..656146 (+) 1404 WP_012000098.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SGO_RS02980 (SGO_0605) - 656143..656529 (+) 387 WP_012000099.1 S1 RNA-binding domain-containing protein -
  SGO_RS02985 (SGO_0606) cysK 656566..657495 (-) 930 WP_012000100.1 cysteine synthase A -
  SGO_RS02990 (SGO_0607) - 657593..658225 (-) 633 WP_041789573.1 YigZ family protein -
  SGO_RS02995 (SGO_0608) comFA/cflA 658281..659582 (+) 1302 WP_012000102.1 DEAD/DEAH box helicase Machinery gene
  SGO_RS03000 (SGO_0609) comFC/cflB 659579..660244 (+) 666 WP_012000103.1 ComF family protein Machinery gene
  SGO_RS03005 (SGO_0610) hpf 660330..660872 (+) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25895.01 Da        Isoelectric Point: 8.4502

>NTDB_id=29064 SGO_RS03000 WP_012000103.1 659579..660244(+) (comFC/cflB) [Streptococcus gordonii str. Challis substr. CH1]
MKQCLICLAILEEQLNFMDLLLLKRKENDICQECLNSFEEIPEEHCPTCYKAGDKKLCKDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSLRKELKNFQSYTILSIPLSESKMRKRGFNQVSGLLEAAQIPYQEILKKKESQTQS
SKDRKERLENTGNFYMIENTKIPKKILLVDDIYTTGATLQDAKLTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=29064 SGO_RS03000 WP_012000103.1 659579..660244(+) (comFC/cflB) [Streptococcus gordonii str. Challis substr. CH1]
ATGAAACAATGTCTAATCTGCTTAGCTATATTAGAAGAGCAGTTGAATTTTATGGATTTATTACTATTAAAAAGAAAAGA
AAATGACATTTGTCAAGAATGCTTAAATTCCTTCGAAGAAATTCCAGAAGAACATTGTCCAACCTGTTATAAAGCTGGGG
ACAAAAAATTGTGCAAAGATTGTCAGTACTGGCAGGAAAGAGGATTAGAAGTAGCGCATAAAAGTTTGTACACTTATAAT
AAAGCAATGAAAGACTATTTTAGTCGCTACAAATTTCAAGGAGATTATCTTTTAAGAAATGTATTTGCCTTAAGCCTAAG
AAAAGAGTTAAAAAATTTTCAAAGCTACACAATTTTAAGCATTCCTTTAAGTGAGAGTAAGATGAGAAAAAGAGGATTCA
ATCAAGTGTCAGGATTACTTGAAGCTGCACAAATACCTTATCAAGAGATATTAAAGAAAAAAGAAAGTCAAACACAGTCT
AGTAAAGACAGAAAAGAAAGATTAGAAAACACAGGGAATTTTTACATGATTGAAAATACGAAAATCCCGAAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGAGCAACCTTGCAAGATGCAAAATTGACATTATTTGAAAATGGAGCGAAAGAAA
TCATGACATTTTCATTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis NCTC 12261

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae Rx1

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae D39

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae R6

49.315

99.095

0.489
  comFC/cflB Streptococcus mitis SK321

48.858

99.095

0.484

Multiple sequence alignment