Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ELB75_RS05840 Genome accession   NZ_CP034670
Coordinates   1164102..1164611 (+) Length   169 a.a.
NCBI ID   WP_164726915.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1159102..1169611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS05815 (ELB75_05815) - 1159406..1159726 (+) 321 WP_206501496.1 hypothetical protein -
  ELB75_RS05820 (ELB75_05820) - 1159867..1160697 (-) 831 WP_126983114.1 basic amino acid ABC transporter substrate-binding protein -
  ELB75_RS05825 (ELB75_05825) - 1161091..1161720 (+) 630 WP_126983115.1 lytic transglycosylase domain-containing protein -
  ELB75_RS05830 (ELB75_05830) - 1161845..1162570 (+) 726 WP_126983116.1 DUF4304 domain-containing protein -
  ELB75_RS05835 (ELB75_05835) - 1162727..1164115 (+) 1389 WP_164726821.1 MFS transporter -
  ELB75_RS05840 (ELB75_05840) ssb 1164102..1164611 (+) 510 WP_164726915.1 single-stranded DNA-binding protein Machinery gene
  ELB75_RS05845 (ELB75_05845) yfaE 1164865..1165170 (-) 306 WP_126983118.1 class I ribonucleotide reductase maintenance protein YfaE -
  ELB75_RS05850 (ELB75_05850) - 1165288..1165773 (-) 486 WP_126983119.1 copper resistance protein NlpE -
  ELB75_RS05855 (ELB75_05855) - 1165834..1166199 (-) 366 WP_126983120.1 hypothetical protein -
  ELB75_RS05860 (ELB75_05860) obgE 1166220..1167359 (-) 1140 WP_126983121.1 GTPase ObgE -
  ELB75_RS05865 (ELB75_05865) - 1167625..1169076 (-) 1452 WP_126984222.1 NAD-dependent succinate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18751.89 Da        Isoelectric Point: 5.3258

>NTDB_id=290488 ELB75_RS05840 WP_164726915.1 1164102..1164611(+) (ssb) [Eikenella corrodens strain KCOM 3110]
MMLNKVMLIGNLGRDPEVRYLPSGDAVANFSIATSENWKDRNGQRQERTEWHNISMFGRLAEIAGQYLKKGSKVYIEGRI
QSRKYTGKDGIERTAYDIVASEMKMLDGRNSGSSPYEGSDQYAAAPSSPRQQPAQGYNEPAYAAEPPAPPRRQAPAPAPI
DDIDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=290488 ELB75_RS05840 WP_164726915.1 1164102..1164611(+) (ssb) [Eikenella corrodens strain KCOM 3110]
ATCATGTTGAATAAAGTGATGCTTATCGGCAACTTGGGGCGCGATCCCGAAGTGCGCTACCTGCCCAGCGGCGATGCCGT
GGCCAATTTTTCGATTGCCACCAGCGAAAACTGGAAAGACCGCAACGGCCAGCGCCAGGAGCGCACCGAATGGCACAACA
TCAGTATGTTTGGCCGCTTGGCAGAAATTGCCGGCCAATATCTGAAAAAAGGCAGCAAGGTATATATCGAAGGCCGCATC
CAAAGCCGCAAATACACCGGCAAAGACGGCATCGAGCGCACCGCCTACGATATCGTGGCCAGCGAAATGAAAATGCTCGA
CGGCCGCAACAGCGGCAGCAGCCCCTACGAAGGCAGCGACCAATACGCAGCTGCACCCAGCAGCCCGCGCCAGCAGCCTG
CCCAAGGCTACAATGAACCGGCCTACGCCGCCGAACCGCCCGCTCCACCCCGCCGCCAAGCCCCTGCCCCGGCACCGATT
GACGATATCGATGACGATATTCCCTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

69.54

100

0.716
  ssb Neisseria gonorrhoeae MS11

69.54

100

0.716
  ssb Vibrio cholerae strain A1552

45.699

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.262

100

0.479