Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VIBHAR_RS17355 Genome accession   NC_009783
Coordinates   3743180..3743824 (+) Length   214 a.a.
NCBI ID   WP_012129010.1    Uniprot ID   A7N147
Organism   Vibrio campbellii ATCC BAA-1116     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3738180..3748824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS17340 (VIBHAR_03702) csrD 3738504..3740534 (-) 2031 WP_012129007.1 RNase E specificity factor CsrD -
  VIBHAR_RS17345 (VIBHAR_03704) - 3740860..3742266 (+) 1407 Protein_3342 IS4 family transposase -
  VIBHAR_RS17350 (VIBHAR_03705) ssb 3742350..3742886 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  VIBHAR_RS17355 (VIBHAR_03706) qstR 3743180..3743824 (+) 645 WP_012129010.1 LuxR C-terminal-related transcriptional regulator Regulator
  VIBHAR_RS17360 (VIBHAR_03707) galU 3743989..3744861 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VIBHAR_RS17365 (VIBHAR_03708) uvrA 3745000..3747822 (+) 2823 WP_012129012.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24585.48 Da        Isoelectric Point: 8.0591

>NTDB_id=29046 VIBHAR_RS17355 WP_012129010.1 3743180..3743824(+) (qstR) [Vibrio campbellii ATCC BAA-1116]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSFEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=29046 VIBHAR_RS17355 WP_012129010.1 3743180..3743824(+) (qstR) [Vibrio campbellii ATCC BAA-1116]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTAGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTTTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGCAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACTATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment