Detailed information NTG0029045

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: VIBHAR_RS17350
• Genome accession: NC_009783
• Coordinates: 3742350..3742886 (-)
• Length: 178 a.a.
• NCBI ID: WP_005432828.1
• Uniprot ID: A0A812GP34
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3740860..3742266	3742350..3742886	flank	84

Gene organization within MGE regions

Location: 3740860..3742886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBHAR_RS17345 (VIBHAR_03704)	-	3740860..3742266 (+)	1407	Protein_3342	IS4 family transposase	-
VIBHAR_RS17350 (VIBHAR_03705)	ssb	3742350..3742886 (-)	537	WP_005432828.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 178 a.a.
• Molecular weight: 19774.84 Da
• Isoelectric Point: 4.9269

>NTDB_id=29045 VIBHAR_RS17350 WP_005432828.1 3742350..3742886(-) (ssb) [Vibrio campbellii ATCC BAA-1116]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide

• Length: 537 bp

>NTDB_id=29045 VIBHAR_RS17350 WP_005432828.1 3742350..3742886(-) (ssb) [Vibrio campbellii ATCC BAA-1116]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGCAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-105)

3D structure

• AlphaFold DB: A0A812GP34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	80.447	100	0.809
ssb	Glaesserella parasuis strain SC1401	56.545	100	0.607
ssb	Neisseria meningitidis MC58	48.333	100	0.489
ssb	Neisseria gonorrhoeae MS11	48.333	100	0.489