Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CSC47_RS11380 | Genome accession | NZ_CP029087 |
| Coordinates | 2160912..2161382 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain AR461 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2131932..2185450 | 2160912..2161382 | within | 0 |
Gene organization within MGE regions
Location: 2131932..2185450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC47_RS11165 (CSC47_1930) | scn | 2131932..2132282 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| CSC47_RS11170 (CSC47_1931) | - | 2132967..2133416 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| CSC47_RS11175 (CSC47_1932) | - | 2133511..2133846 (-) | 336 | Protein_2072 | SH3 domain-containing protein | - |
| CSC47_RS11190 (CSC47_1933) | sak | 2134495..2134986 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| CSC47_RS11195 (CSC47_1934) | - | 2135177..2135932 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| CSC47_RS11200 (CSC47_1935) | - | 2135944..2136198 (-) | 255 | WP_000611512.1 | phage holin | - |
| CSC47_RS11205 | - | 2136250..2136357 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| CSC47_RS11210 (CSC47_1936) | pepG1 | 2136410..2136544 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| CSC47_RS11215 (CSC47_1937) | - | 2136736..2137032 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| CSC47_RS11220 (CSC47_1938) | - | 2137090..2137377 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| CSC47_RS11225 (CSC47_1939) | - | 2137424..2137576 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| CSC47_RS11230 (CSC47_1940) | - | 2137566..2141351 (-) | 3786 | WP_000582154.1 | phage tail spike protein | - |
| CSC47_RS11235 (CSC47_1941) | - | 2141367..2142851 (-) | 1485 | WP_000567396.1 | phage tail domain-containing protein | - |
| CSC47_RS11240 (CSC47_1942) | - | 2142848..2147380 (-) | 4533 | WP_001557459.1 | phage tail tape measure protein | - |
| CSC47_RS15410 (CSC47_1943) | - | 2147437..2147574 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| CSC47_RS11245 (CSC47_1944) | - | 2147625..2147975 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| CSC47_RS11250 (CSC47_1945) | - | 2148025..2148255 (-) | 231 | Protein_2086 | Ig-like domain-containing protein | - |
| CSC47_RS11255 (CSC47_1946) | - | 2148291..2148935 (-) | 645 | WP_000985142.1 | major tail protein | - |
| CSC47_RS11260 (CSC47_1947) | - | 2148936..2149343 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| CSC47_RS11265 (CSC47_1948) | - | 2149340..2149744 (-) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| CSC47_RS11270 (CSC47_1949) | - | 2149741..2150103 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| CSC47_RS11275 (CSC47_1950) | - | 2150087..2150371 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| CSC47_RS11280 (CSC47_1951) | - | 2150361..2150645 (-) | 285 | WP_000238241.1 | hypothetical protein | - |
| CSC47_RS11285 (CSC47_1952) | - | 2150665..2151810 (-) | 1146 | WP_000154565.1 | phage major capsid protein | - |
| CSC47_RS11290 (CSC47_1953) | - | 2151833..2152570 (-) | 738 | WP_000861911.1 | head maturation protease, ClpP-related | - |
| CSC47_RS11295 (CSC47_1954) | - | 2152554..2153717 (-) | 1164 | WP_000025268.1 | phage portal protein | - |
| CSC47_RS11300 (CSC47_1955) | - | 2153733..2155394 (-) | 1662 | WP_000625096.1 | terminase large subunit | - |
| CSC47_RS11305 (CSC47_1956) | - | 2155391..2155735 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| CSC47_RS11310 (CSC47_1957) | - | 2155866..2156165 (-) | 300 | WP_000988332.1 | HNH endonuclease | - |
| CSC47_RS11315 (CSC47_1958) | - | 2156397..2156813 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| CSC47_RS11320 (CSC47_1959) | - | 2156841..2157041 (-) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| CSC47_RS11325 (CSC47_1960) | - | 2157041..2157190 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| CSC47_RS11330 (CSC47_1961) | - | 2157187..2157393 (-) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| CSC47_RS11335 (CSC47_1962) | - | 2157390..2157635 (-) | 246 | WP_001282077.1 | hypothetical protein | - |
| CSC47_RS11340 (CSC47_1963) | - | 2157672..2158208 (-) | 537 | WP_000185693.1 | dUTPase | - |
| CSC47_RS11345 (CSC47_1964) | - | 2158205..2158450 (-) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| CSC47_RS11350 (CSC47_1965) | - | 2158465..2158713 (-) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| CSC47_RS11355 (CSC47_1966) | - | 2158710..2158967 (-) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| CSC47_RS11360 (CSC47_1967) | - | 2158967..2159338 (-) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| CSC47_RS11365 (CSC47_1968) | - | 2159351..2159755 (-) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CSC47_RS11370 (CSC47_1969) | - | 2159764..2159982 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| CSC47_RS11375 (CSC47_1970) | - | 2159989..2160882 (-) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| CSC47_RS11380 (CSC47_1971) | ssbA | 2160912..2161382 (-) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| CSC47_RS11385 (CSC47_1972) | - | 2161383..2162000 (-) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| CSC47_RS11390 (CSC47_1973) | - | 2162081..2163001 (-) | 921 | WP_000180600.1 | recombinase RecT | - |
| CSC47_RS11395 (CSC47_1974) | - | 2163003..2164946 (-) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| CSC47_RS11400 | - | 2164955..2165218 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| CSC47_RS11405 (CSC47_1975) | - | 2165227..2165487 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| CSC47_RS11410 (CSC47_1976) | - | 2165492..2165794 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| CSC47_RS11415 (CSC47_1977) | - | 2165889..2166050 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| CSC47_RS11420 (CSC47_1978) | - | 2166047..2166370 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| CSC47_RS11425 (CSC47_1979) | - | 2166425..2166805 (+) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| CSC47_RS11430 (CSC47_1980) | - | 2166792..2166989 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| CSC47_RS11435 (CSC47_1981) | - | 2167005..2167754 (-) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| CSC47_RS11440 (CSC47_1982) | - | 2167811..2168020 (+) | 210 | WP_000772137.1 | hypothetical protein | - |
| CSC47_RS11445 (CSC47_1983) | - | 2168013..2168153 (-) | 141 | WP_000939495.1 | hypothetical protein | - |
| CSC47_RS11450 (CSC47_1984) | - | 2168168..2168611 (-) | 444 | WP_000435360.1 | hypothetical protein | - |
| CSC47_RS11455 (CSC47_1985) | - | 2168624..2168866 (-) | 243 | WP_000639923.1 | DUF739 family protein | - |
| CSC47_RS11460 (CSC47_1986) | - | 2169030..2169746 (+) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| CSC47_RS11465 (CSC47_1987) | - | 2169758..2170612 (+) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| CSC47_RS15415 (CSC47_1988) | - | 2170686..2170832 (+) | 147 | WP_000345949.1 | hypothetical protein | - |
| CSC47_RS11470 (CSC47_1989) | - | 2170829..2171014 (+) | 186 | WP_000109189.1 | hypothetical protein | - |
| CSC47_RS11475 (CSC47_1990) | - | 2171085..2171267 (+) | 183 | WP_000705245.1 | hypothetical protein | - |
| CSC47_RS11480 (CSC47_1991) | - | 2171346..2172059 (+) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CSC47_RS11485 (CSC47_1992) | - | 2172250..2173287 (+) | 1038 | WP_000857200.1 | site-specific integrase | - |
| CSC47_RS11490 (CSC47_1993) | sph | 2173338..2174168 (+) | 831 | Protein_2135 | sphingomyelin phosphodiesterase | - |
| CSC47_RS11495 (CSC47_1994) | lukG | 2174406..2175422 (-) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| CSC47_RS11500 (CSC47_1995) | lukH | 2175444..2176499 (-) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| CSC47_RS11505 (CSC47_1996) | - | 2176935..2178158 (+) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| CSC47_RS11510 (CSC47_1997) | - | 2178602..2179909 (+) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| CSC47_RS11520 (CSC47_1998) | groL | 2180449..2182065 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| CSC47_RS11525 (CSC47_1999) | groES | 2182141..2182425 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| CSC47_RS11530 (CSC47_2000) | mroQ | 2182600..2183343 (+) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| CSC47_RS11535 (CSC47_2001) | - | 2183368..2184627 (-) | 1260 | WP_001558038.1 | SdrH family protein | - |
| CSC47_RS11540 (CSC47_2002) | - | 2184824..2185450 (+) | 627 | WP_000522381.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=290321 CSC47_RS11380 WP_000934759.1 2160912..2161382(-) (ssbA) [Staphylococcus aureus strain AR461]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=290321 CSC47_RS11380 WP_000934759.1 2160912..2161382(-) (ssbA) [Staphylococcus aureus strain AR461]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |