Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CSC50_RS08915 | Genome accession | NZ_CP029082 |
| Coordinates | 1680161..1680631 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain AR465 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1665044..1710987 | 1680161..1680631 | within | 0 |
Gene organization within MGE regions
Location: 1665044..1710987
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC50_RS08795 (CSC50_1583) | lukH | 1665044..1666099 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| CSC50_RS08800 (CSC50_1584) | lukG | 1666121..1667137 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| CSC50_RS08805 (CSC50_1585) | sph | 1667375..1668205 (-) | 831 | Protein_1610 | sphingomyelin phosphodiesterase | - |
| CSC50_RS08810 (CSC50_1586) | - | 1668256..1669293 (-) | 1038 | WP_000857200.1 | site-specific integrase | - |
| CSC50_RS08815 (CSC50_1587) | - | 1669484..1670197 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CSC50_RS08820 (CSC50_1588) | - | 1670276..1670458 (-) | 183 | WP_000705245.1 | hypothetical protein | - |
| CSC50_RS08825 (CSC50_1589) | - | 1670529..1670714 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| CSC50_RS15565 (CSC50_1590) | - | 1670711..1670857 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| CSC50_RS08830 (CSC50_1591) | - | 1670931..1671785 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| CSC50_RS08835 (CSC50_1592) | - | 1671797..1672513 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| CSC50_RS08840 (CSC50_1593) | - | 1672677..1672919 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| CSC50_RS08845 (CSC50_1594) | - | 1672932..1673375 (+) | 444 | WP_000435360.1 | hypothetical protein | - |
| CSC50_RS08850 (CSC50_1595) | - | 1673390..1673530 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| CSC50_RS08855 (CSC50_1596) | - | 1673523..1673732 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| CSC50_RS08860 (CSC50_1597) | - | 1673789..1674538 (+) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| CSC50_RS08865 (CSC50_1598) | - | 1674554..1674751 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| CSC50_RS08870 (CSC50_1599) | - | 1674738..1675118 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| CSC50_RS08875 (CSC50_1600) | - | 1675173..1675496 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| CSC50_RS08880 | - | 1675493..1675654 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| CSC50_RS08885 (CSC50_1601) | - | 1675749..1676051 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| CSC50_RS08890 (CSC50_1602) | - | 1676056..1676316 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| CSC50_RS08895 (CSC50_1603) | - | 1676325..1676588 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| CSC50_RS08900 (CSC50_1604) | - | 1676597..1678540 (+) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| CSC50_RS08905 (CSC50_1605) | - | 1678542..1679462 (+) | 921 | WP_000180600.1 | recombinase RecT | - |
| CSC50_RS08910 (CSC50_1606) | - | 1679543..1680160 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| CSC50_RS08915 (CSC50_1607) | ssbA | 1680161..1680631 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| CSC50_RS08920 (CSC50_1608) | - | 1680661..1681554 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| CSC50_RS08925 (CSC50_1609) | - | 1681561..1681779 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| CSC50_RS08930 (CSC50_1610) | - | 1681788..1682192 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CSC50_RS08935 (CSC50_1611) | - | 1682205..1682576 (+) | 372 | WP_031864466.1 | SA1788 family PVL leukocidin-associated protein | - |
| CSC50_RS08940 (CSC50_1612) | - | 1682576..1682833 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| CSC50_RS08945 (CSC50_1613) | - | 1682830..1683078 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| CSC50_RS08950 (CSC50_1614) | - | 1683093..1683338 (+) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| CSC50_RS08955 (CSC50_1615) | - | 1683335..1683871 (+) | 537 | WP_000185693.1 | dUTPase | - |
| CSC50_RS08960 (CSC50_1616) | - | 1683908..1684153 (+) | 246 | WP_001282077.1 | hypothetical protein | - |
| CSC50_RS08965 (CSC50_1617) | - | 1684150..1684356 (+) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| CSC50_RS08970 (CSC50_1618) | - | 1684353..1684502 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| CSC50_RS08975 (CSC50_1619) | - | 1684502..1684702 (+) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| CSC50_RS08980 (CSC50_1620) | - | 1684730..1685146 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| CSC50_RS08985 (CSC50_1621) | - | 1685378..1685677 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
| CSC50_RS08990 (CSC50_1622) | - | 1685808..1686152 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| CSC50_RS08995 (CSC50_1623) | - | 1686149..1687810 (+) | 1662 | WP_000625096.1 | terminase large subunit | - |
| CSC50_RS09000 (CSC50_1624) | - | 1687826..1688989 (+) | 1164 | WP_000025268.1 | phage portal protein | - |
| CSC50_RS09005 (CSC50_1625) | - | 1688973..1689710 (+) | 738 | WP_000861911.1 | head maturation protease, ClpP-related | - |
| CSC50_RS09010 (CSC50_1626) | - | 1689733..1690878 (+) | 1146 | WP_000154568.1 | phage major capsid protein | - |
| CSC50_RS09015 (CSC50_1627) | - | 1690898..1691182 (+) | 285 | WP_000238241.1 | hypothetical protein | - |
| CSC50_RS09020 (CSC50_1628) | - | 1691172..1691456 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| CSC50_RS09025 (CSC50_1629) | - | 1691440..1691802 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| CSC50_RS09030 (CSC50_1630) | - | 1691799..1692203 (+) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| CSC50_RS09035 (CSC50_1631) | - | 1692200..1692607 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| CSC50_RS09040 (CSC50_1632) | - | 1692608..1693252 (+) | 645 | WP_000985142.1 | major tail protein | - |
| CSC50_RS09045 (CSC50_1633) | - | 1693306..1693518 (+) | 213 | WP_078101489.1 | Ig-like domain-containing protein | - |
| CSC50_RS09050 (CSC50_1634) | - | 1693568..1693918 (+) | 351 | WP_001096355.1 | hypothetical protein | - |
| CSC50_RS15570 (CSC50_1635) | - | 1693969..1694106 (+) | 138 | WP_001549167.1 | hypothetical protein | - |
| CSC50_RS09055 (CSC50_1636) | - | 1694163..1698695 (+) | 4533 | WP_001557459.1 | phage tail tape measure protein | - |
| CSC50_RS09060 (CSC50_1637) | - | 1698692..1700176 (+) | 1485 | WP_000567396.1 | phage tail domain-containing protein | - |
| CSC50_RS09065 (CSC50_1638) | - | 1700192..1703977 (+) | 3786 | WP_000582154.1 | phage tail spike protein | - |
| CSC50_RS09070 (CSC50_1639) | - | 1703967..1704119 (+) | 153 | WP_031864465.1 | hypothetical protein | - |
| CSC50_RS09075 (CSC50_1640) | - | 1704166..1704453 (+) | 288 | WP_001040261.1 | hypothetical protein | - |
| CSC50_RS09080 (CSC50_1641) | - | 1704511..1704807 (+) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| CSC50_RS09085 | pepG1 | 1704999..1705133 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| CSC50_RS09090 | - | 1705186..1705293 (-) | 108 | WP_001791821.1 | hypothetical protein | - |
| CSC50_RS09095 (CSC50_1642) | - | 1705345..1705599 (+) | 255 | WP_000611512.1 | phage holin | - |
| CSC50_RS09100 (CSC50_1643) | - | 1705611..1706366 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| CSC50_RS09105 (CSC50_1644) | sak | 1706557..1707048 (+) | 492 | WP_000919350.1 | staphylokinase | - |
| CSC50_RS09120 (CSC50_1645) | - | 1707698..1708033 (+) | 336 | Protein_1673 | SH3 domain-containing protein | - |
| CSC50_RS09125 (CSC50_1646) | - | 1708128..1708577 (-) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| CSC50_RS09130 (CSC50_1647) | scn | 1709262..1709612 (+) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| CSC50_RS09135 (CSC50_1648) | - | 1709665..1709925 (-) | 261 | WP_001791826.1 | hypothetical protein | - |
| CSC50_RS15770 | - | 1709904..1710212 (-) | 309 | WP_001795394.1 | hypothetical protein | - |
| CSC50_RS09145 (CSC50_1649) | - | 1710236..1710415 (-) | 180 | WP_000669789.1 | hypothetical protein | - |
| CSC50_RS09150 (CSC50_1650) | - | 1710787..1710984 (-) | 198 | WP_000239610.1 | phospholipase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=290171 CSC50_RS08915 WP_000934759.1 1680161..1680631(+) (ssbA) [Staphylococcus aureus strain AR465]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=290171 CSC50_RS08915 WP_000934759.1 1680161..1680631(+) (ssbA) [Staphylococcus aureus strain AR465]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |