Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DDT09_RS12205 Genome accession   NZ_CP029070
Coordinates   2508340..2508675 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2503340..2513675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS12185 (DDT09_12185) gcvT 2503946..2505046 (-) 1101 WP_061862388.1 glycine cleavage system aminomethyltransferase GcvT -
  DDT09_RS12190 (DDT09_12190) - 2505470..2507140 (+) 1671 WP_021494309.1 SNF2-related protein -
  DDT09_RS12195 (DDT09_12195) - 2507162..2507956 (+) 795 WP_014418368.1 YqhG family protein -
  DDT09_RS12200 (DDT09_12200) sinI 2508133..2508306 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  DDT09_RS12205 (DDT09_12205) sinR 2508340..2508675 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DDT09_RS12210 (DDT09_12210) - 2508723..2509508 (-) 786 WP_007408329.1 TasA family protein -
  DDT09_RS12215 (DDT09_12215) - 2509573..2510157 (-) 585 WP_014418370.1 signal peptidase I -
  DDT09_RS12220 (DDT09_12220) tapA 2510129..2510800 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  DDT09_RS12225 (DDT09_12225) - 2511059..2511388 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  DDT09_RS12230 (DDT09_12230) - 2511429..2511608 (-) 180 WP_003153093.1 YqzE family protein -
  DDT09_RS12235 (DDT09_12235) comGG 2511665..2512042 (-) 378 WP_061862389.1 competence type IV pilus minor pilin ComGG Machinery gene
  DDT09_RS12240 (DDT09_12240) comGF 2512043..2512438 (-) 396 WP_061862390.1 competence type IV pilus minor pilin ComGF -
  DDT09_RS12245 (DDT09_12245) comGE 2512452..2512766 (-) 315 WP_061862391.1 competence type IV pilus minor pilin ComGE Machinery gene
  DDT09_RS12250 (DDT09_12250) comGD 2512750..2513187 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  DDT09_RS12255 (DDT09_12255) comGC 2513177..2513443 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=289962 DDT09_RS12205 WP_003153104.1 2508340..2508675(+) (sinR) [Bacillus amyloliquefaciens strain ALB69]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=289962 DDT09_RS12205 WP_003153104.1 2508340..2508675(+) (sinR) [Bacillus amyloliquefaciens strain ALB69]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment