Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   DDT09_RS12015 Genome accession   NZ_CP029070
Coordinates   2474171..2474971 (-) Length   266 a.a.
NCBI ID   WP_061862382.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2469171..2479971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS11990 (DDT09_11990) - 2469714..2470346 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  DDT09_RS20330 - 2470643..2470780 (+) 138 WP_014470646.1 hypothetical protein -
  DDT09_RS11995 (DDT09_11995) - 2470874..2471992 (+) 1119 WP_032863662.1 NADH-dependent flavin oxidoreductase -
  DDT09_RS12000 (DDT09_12000) - 2472119..2472331 (+) 213 WP_029973891.1 spore germination protein -
  DDT09_RS12005 (DDT09_12005) - 2472457..2472669 (+) 213 WP_014418351.1 spore germination protein -
  DDT09_RS12010 (DDT09_12010) alr 2472844..2474025 (+) 1182 WP_021494302.1 alanine racemase -
  DDT09_RS12015 (DDT09_12015) spo0A 2474171..2474971 (-) 801 WP_061862382.1 sporulation transcription factor Spo0A Regulator
  DDT09_RS12020 (DDT09_12020) spoIVB 2475252..2476532 (-) 1281 WP_014418352.1 SpoIVB peptidase -
  DDT09_RS12025 (DDT09_12025) recN 2476696..2478426 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  DDT09_RS12030 (DDT09_12030) argR 2478458..2478907 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  DDT09_RS12035 (DDT09_12035) - 2479004..2479849 (-) 846 WP_061862383.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=289959 DDT09_RS12015 WP_061862382.1 2474171..2474971(-) (spo0A) [Bacillus amyloliquefaciens strain ALB69]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESEIEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=289959 DDT09_RS12015 WP_061862382.1 2474171..2474971(-) (spo0A) [Bacillus amyloliquefaciens strain ALB69]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGATCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATCTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.255

100

0.966

Multiple sequence alignment