NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	EJJ34_RS15325	Genome accession	NZ_CP034484
Coordinates	2857068..2857763 (-)	Length	231 a.a.
NCBI ID	WP_003246034.1	Uniprot ID	Q02170
Organism	Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2852068..2862763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJJ34_RS15300 (EJJ34_15305)	minD	2853004..2853810 (-)	807	WP_004398624.1	septum site-determining protein MinD	-
EJJ34_RS15305 (EJJ34_15310)	minC	2853812..2854492 (-)	681	WP_004398901.1	septum site-determining protein MinC	-
EJJ34_RS15310 (EJJ34_15315)	mreD	2854545..2855063 (-)	519	WP_004398811.1	rod shape-determining protein MreD	-
EJJ34_RS15315 (EJJ34_15320)	mreC	2855060..2855932 (-)	873	WP_009967915.1	rod shape-determining protein MreC	-
EJJ34_RS15320 (EJJ34_15325)	mreB	2855963..2856976 (-)	1014	WP_003229650.1	cell shape-determining protein MreB	-
EJJ34_RS15325 (EJJ34_15330)	ysxA/radC	2857068..2857763 (-)	696	WP_003246034.1	DNA repair protein RadC	Machinery gene
EJJ34_RS15330 (EJJ34_15335)	maf	2857800..2858369 (-)	570	WP_004398496.1	Maf family nucleotide pyrophosphatase	-
EJJ34_RS15335 (EJJ34_15340)	spoIIB	2858522..2859520 (-)	999	WP_004398782.1	stage II sporulation protein SpoIIB	-
EJJ34_RS15340 (EJJ34_15345)	comC	2859654..2860400 (-)	747	WP_010886586.1	A24 family peptidase	Machinery gene
EJJ34_RS15345 (EJJ34_15350)	folC	2860540..2861832 (-)	1293	WP_003229640.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

Download Length: 231 a.a. Molecular weight: 26146.48 Da Isoelectric Point: 7.9285

                                >NTDB_id=289948 EJJ34_RS15325 WP_003246034.1 2857068..2857763(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]

MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG

IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH

PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide

Download Length: 696 bp

                                >NTDB_id=289948 EJJ34_RS15325 WP_003246034.1 2857068..2857763(-) (ysxA/radC) [Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 strain NCIB 3610]

TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG

AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT

CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA

ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA

TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT

GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC

CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC

GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC

ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	100	100	1
radC	Streptococcus pneumoniae TIGR4	48.095	90.909	0.437
radC	Streptococcus pneumoniae R6	47.619	90.909	0.433
radC	Streptococcus pneumoniae D39	47.619	90.909	0.433
radC	Streptococcus gordonii str. Challis substr. CH1	46.667	90.909	0.424

Detailed information NTG0289948