Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DDT09_RS04255 Genome accession   NZ_CP029070
Coordinates   843232..844023 (+) Length   263 a.a.
NCBI ID   WP_061861992.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 838232..849023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS04230 (DDT09_04230) - 840226..841110 (+) 885 WP_061861285.1 PhzF family phenazine biosynthesis isomerase -
  DDT09_RS04235 (DDT09_04235) - 841187..841771 (+) 585 WP_007408549.1 nitroreductase -
  DDT09_RS04240 (DDT09_04240) - 841811..842002 (-) 192 WP_003155508.1 YfhD family protein -
  DDT09_RS04245 (DDT09_04245) - 842073..842183 (-) 111 WP_003155504.1 YfhE family protein -
  DDT09_RS04250 (DDT09_04250) - 842241..843140 (-) 900 WP_061861991.1 TIGR01777 family oxidoreductase -
  DDT09_RS04255 (DDT09_04255) recX 843232..844023 (+) 792 WP_061861992.1 recombination regulator RecX Regulator
  DDT09_RS04260 (DDT09_04260) - 844030..844344 (+) 315 WP_007408553.1 YfhH family protein -
  DDT09_RS04265 (DDT09_04265) - 844489..845682 (+) 1194 WP_029973982.1 MFS transporter -
  DDT09_RS04270 (DDT09_04270) - 845722..846111 (-) 390 WP_014417236.1 DUF2606 family protein -
  DDT09_RS04275 (DDT09_04275) - 846074..846985 (-) 912 WP_014417237.1 serine protease -
  DDT09_RS04280 (DDT09_04280) - 847130..847282 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  DDT09_RS04285 (DDT09_04285) - 847406..847675 (+) 270 WP_003155492.1 YfhJ family protein -
  DDT09_RS04290 (DDT09_04290) - 847807..848334 (+) 528 WP_014417238.1 SH3 domain-containing protein -
  DDT09_RS04295 (DDT09_04295) - 848420..848755 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30920.14 Da        Isoelectric Point: 6.5190

>NTDB_id=289934 DDT09_RS04255 WP_061861992.1 843232..844023(+) (recX) [Bacillus amyloliquefaciens strain ALB69]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDGDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=289934 DDT09_RS04255 WP_061861992.1 843232..844023(+) (recX) [Bacillus amyloliquefaciens strain ALB69]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGGCGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.707

100

0.787

Multiple sequence alignment