Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DDT09_RS01775 Genome accession   NZ_CP029070
Coordinates   328881..329318 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 323881..334318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS01750 (DDT09_01750) - 324901..326037 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  DDT09_RS01755 (DDT09_01755) - 326052..326486 (+) 435 WP_061861834.1 RDD family protein -
  DDT09_RS01760 (DDT09_01760) - 326558..326881 (+) 324 WP_007409357.1 YckD family protein -
  DDT09_RS01765 (DDT09_01765) - 326985..328421 (+) 1437 WP_061861835.1 family 1 glycosylhydrolase -
  DDT09_RS01770 (DDT09_01770) nin/comJ 328462..328860 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  DDT09_RS01775 (DDT09_01775) nucA/comI 328881..329318 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DDT09_RS01780 (DDT09_01780) hxlB 329649..330206 (-) 558 WP_061861836.1 6-phospho-3-hexuloisomerase -
  DDT09_RS01785 (DDT09_01785) hxlA 330203..330838 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  DDT09_RS01790 (DDT09_01790) - 331070..331432 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=289929 DDT09_RS01775 WP_003156588.1 328881..329318(-) (nucA/comI) [Bacillus amyloliquefaciens strain ALB69]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=289929 DDT09_RS01775 WP_003156588.1 328881..329318(-) (nucA/comI) [Bacillus amyloliquefaciens strain ALB69]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment