Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DDT09_RS01980 Genome accession   NZ_CP029070
Coordinates   390076..391029 (+) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385076..396029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS01955 (DDT09_01955) - 385119..386546 (+) 1428 WP_089072406.1 HAMP domain-containing sensor histidine kinase -
  DDT09_RS01960 (DDT09_01960) rapC 386705..387853 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  DDT09_RS01965 (DDT09_01965) phrC 387837..387956 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DDT09_RS01970 (DDT09_01970) - 388108..388203 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  DDT09_RS01975 (DDT09_01975) - 388298..389662 (-) 1365 WP_021495117.1 aspartate kinase -
  DDT09_RS01980 (DDT09_01980) ceuB 390076..391029 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  DDT09_RS01985 (DDT09_01985) - 391019..391966 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  DDT09_RS01990 (DDT09_01990) - 391960..392718 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  DDT09_RS01995 (DDT09_01995) - 392740..393684 (+) 945 WP_012116805.1 siderophore ABC transporter substrate-binding protein -
  DDT09_RS02000 (DDT09_02000) - 393726..395150 (-) 1425 WP_014416906.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=289932 DDT09_RS01980 WP_015239156.1 390076..391029(+) (ceuB) [Bacillus amyloliquefaciens strain ALB69]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=289932 DDT09_RS01980 WP_015239156.1 390076..391029(+) (ceuB) [Bacillus amyloliquefaciens strain ALB69]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTATTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAATTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment