Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | DDT09_RS01960 | Genome accession | NZ_CP029070 |
| Coordinates | 386705..387853 (+) | Length | 382 a.a. |
| NCBI ID | WP_014304340.1 | Uniprot ID | I2C1C2 |
| Organism | Bacillus amyloliquefaciens strain ALB69 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 381705..392853
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDT09_RS01940 (DDT09_01940) | - | 382105..382788 (-) | 684 | WP_022552585.1 | ABC transporter ATP-binding protein | - |
| DDT09_RS01945 (DDT09_01945) | - | 382803..384236 (-) | 1434 | WP_061861849.1 | ABC transporter permease | - |
| DDT09_RS01950 (DDT09_01950) | - | 384449..385132 (+) | 684 | WP_022552587.1 | response regulator transcription factor | - |
| DDT09_RS01955 (DDT09_01955) | - | 385119..386546 (+) | 1428 | WP_089072406.1 | HAMP domain-containing sensor histidine kinase | - |
| DDT09_RS01960 (DDT09_01960) | rapC | 386705..387853 (+) | 1149 | WP_014304340.1 | Rap family tetratricopeptide repeat protein | Regulator |
| DDT09_RS01965 (DDT09_01965) | phrC | 387837..387956 (+) | 120 | WP_003156334.1 | PhrC/PhrF family phosphatase-inhibitory pheromone | Regulator |
| DDT09_RS01970 (DDT09_01970) | - | 388108..388203 (-) | 96 | WP_021495118.1 | YjcZ family sporulation protein | - |
| DDT09_RS01975 (DDT09_01975) | - | 388298..389662 (-) | 1365 | WP_021495117.1 | aspartate kinase | - |
| DDT09_RS01980 (DDT09_01980) | ceuB | 390076..391029 (+) | 954 | WP_015239156.1 | ABC transporter permease | Machinery gene |
| DDT09_RS01985 (DDT09_01985) | - | 391019..391966 (+) | 948 | WP_014416905.1 | iron chelate uptake ABC transporter family permease subunit | - |
| DDT09_RS01990 (DDT09_01990) | - | 391960..392718 (+) | 759 | WP_012116804.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 382 a.a. Molecular weight: 45494.75 Da Isoelectric Point: 4.9939
>NTDB_id=289930 DDT09_RS01960 WP_014304340.1 386705..387853(+) (rapC) [Bacillus amyloliquefaciens strain ALB69]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI
Nucleotide
Download Length: 1149 bp
>NTDB_id=289930 DDT09_RS01960 WP_014304340.1 386705..387853(+) (rapC) [Bacillus amyloliquefaciens strain ALB69]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTATGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAAGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTATGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAAGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
82.199 |
100 |
0.822 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
57.105 |
99.476 |
0.568 |