Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BAALB65_RS17395 Genome accession   NZ_CP029069
Coordinates   3498953..3499642 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3493953..3504642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS17360 (BAALB65_17360) - 3494151..3494633 (-) 483 WP_031379255.1 flagellar protein FlgN -
  BAALB65_RS17365 (BAALB65_17365) flgM 3494648..3494914 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAALB65_RS17370 (BAALB65_17370) - 3494984..3495403 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  BAALB65_RS17375 (BAALB65_17375) comFC 3495477..3496166 (-) 690 WP_204082506.1 ComF family protein Machinery gene
  BAALB65_RS17380 (BAALB65_17380) - 3496172..3496456 (-) 285 WP_022553866.1 competence protein ComFB -
  BAALB65_RS17385 (BAALB65_17385) comFA 3496514..3497899 (-) 1386 WP_109567248.1 DEAD/DEAH box helicase Machinery gene
  BAALB65_RS17390 (BAALB65_17390) - 3498007..3498855 (-) 849 WP_003151387.1 DegV family protein -
  BAALB65_RS17395 (BAALB65_17395) degU 3498953..3499642 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAALB65_RS17400 (BAALB65_17400) degS 3499719..3500882 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAALB65_RS17405 (BAALB65_17405) - 3501105..3501752 (+) 648 WP_007614107.1 YigZ family protein -
  BAALB65_RS17410 (BAALB65_17410) - 3501757..3502971 (+) 1215 WP_100262038.1 LCP family protein -
  BAALB65_RS17415 (BAALB65_17415) - 3503071..3504147 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=289912 BAALB65_RS17395 WP_003219701.1 3498953..3499642(-) (degU) [Bacillus amyloliquefaciens strain ALB65]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=289912 BAALB65_RS17395 WP_003219701.1 3498953..3499642(-) (degU) [Bacillus amyloliquefaciens strain ALB65]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment