Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BAALB65_RS17385 Genome accession   NZ_CP029069
Coordinates   3496514..3497899 (-) Length   461 a.a.
NCBI ID   WP_109567248.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491514..3502899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS17350 (BAALB65_17350) flgL 3491689..3492606 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  BAALB65_RS17355 (BAALB65_17355) flgK 3492618..3494135 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BAALB65_RS17360 (BAALB65_17360) - 3494151..3494633 (-) 483 WP_031379255.1 flagellar protein FlgN -
  BAALB65_RS17365 (BAALB65_17365) flgM 3494648..3494914 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAALB65_RS17370 (BAALB65_17370) - 3494984..3495403 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  BAALB65_RS17375 (BAALB65_17375) comFC 3495477..3496166 (-) 690 WP_204082506.1 ComF family protein Machinery gene
  BAALB65_RS17380 (BAALB65_17380) - 3496172..3496456 (-) 285 WP_022553866.1 competence protein ComFB -
  BAALB65_RS17385 (BAALB65_17385) comFA 3496514..3497899 (-) 1386 WP_109567248.1 DEAD/DEAH box helicase Machinery gene
  BAALB65_RS17390 (BAALB65_17390) - 3498007..3498855 (-) 849 WP_003151387.1 DegV family protein -
  BAALB65_RS17395 (BAALB65_17395) degU 3498953..3499642 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAALB65_RS17400 (BAALB65_17400) degS 3499719..3500882 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BAALB65_RS17405 (BAALB65_17405) - 3501105..3501752 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52613.02 Da        Isoelectric Point: 10.2370

>NTDB_id=289911 BAALB65_RS17385 WP_109567248.1 3496514..3497899(-) (comFA) [Bacillus amyloliquefaciens strain ALB65]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIPRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=289911 BAALB65_RS17385 WP_109567248.1 3496514..3497899(-) (comFA) [Bacillus amyloliquefaciens strain ALB65]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCCCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment