Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BAALB65_RS17375 Genome accession   NZ_CP029069
Coordinates   3495477..3496166 (-) Length   229 a.a.
NCBI ID   WP_204082506.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3490477..3501166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS17340 (BAALB65_17340) fliW 3490568..3490999 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  BAALB65_RS17345 (BAALB65_17345) - 3491029..3491598 (-) 570 WP_017418818.1 DUF6470 family protein -
  BAALB65_RS17350 (BAALB65_17350) flgL 3491689..3492606 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  BAALB65_RS17355 (BAALB65_17355) flgK 3492618..3494135 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BAALB65_RS17360 (BAALB65_17360) - 3494151..3494633 (-) 483 WP_031379255.1 flagellar protein FlgN -
  BAALB65_RS17365 (BAALB65_17365) flgM 3494648..3494914 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BAALB65_RS17370 (BAALB65_17370) - 3494984..3495403 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  BAALB65_RS17375 (BAALB65_17375) comFC 3495477..3496166 (-) 690 WP_204082506.1 ComF family protein Machinery gene
  BAALB65_RS17380 (BAALB65_17380) - 3496172..3496456 (-) 285 WP_022553866.1 competence protein ComFB -
  BAALB65_RS17385 (BAALB65_17385) comFA 3496514..3497899 (-) 1386 WP_109567248.1 DEAD/DEAH box helicase Machinery gene
  BAALB65_RS17390 (BAALB65_17390) - 3498007..3498855 (-) 849 WP_003151387.1 DegV family protein -
  BAALB65_RS17395 (BAALB65_17395) degU 3498953..3499642 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BAALB65_RS17400 (BAALB65_17400) degS 3499719..3500882 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25317.99 Da        Isoelectric Point: 8.2927

>NTDB_id=289910 BAALB65_RS17375 WP_204082506.1 3495477..3496166(-) (comFC) [Bacillus amyloliquefaciens strain ALB65]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLVRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=289910 BAALB65_RS17375 WP_204082506.1 3495477..3496166(-) (comFC) [Bacillus amyloliquefaciens strain ALB65]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
AGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAGTCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment