Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BTJ40_RS02875 Genome accession   NZ_CP029064
Coordinates   633697..634320 (+) Length   207 a.a.
NCBI ID   WP_108731682.1    Uniprot ID   A0A2S1JN55
Organism   Microbulbifer sp. A4B17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 628697..639320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTJ40_RS02865 (BTJ40_02865) - 630876..632282 (+) 1407 WP_108731680.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  BTJ40_RS02870 (BTJ40_02870) - 632373..633524 (+) 1152 WP_108731681.1 MFS transporter -
  BTJ40_RS02875 (BTJ40_02875) ssb 633697..634320 (+) 624 WP_108731682.1 single-stranded DNA-binding protein Machinery gene
  BTJ40_RS02880 (BTJ40_02880) - 634336..635184 (+) 849 WP_108731683.1 sugar nucleotide-binding protein -
  BTJ40_RS02885 (BTJ40_02885) fabB 635244..636467 (-) 1224 WP_108731684.1 beta-ketoacyl-ACP synthase I -
  BTJ40_RS02890 (BTJ40_02890) fabA 636535..637059 (-) 525 WP_108731685.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  BTJ40_RS02895 (BTJ40_02895) galU 637377..638228 (+) 852 WP_108731686.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21986.13 Da        Isoelectric Point: 4.9930

>NTDB_id=289788 BTJ40_RS02875 WP_108731682.1 633697..634320(+) (ssb) [Microbulbifer sp. A4B17]
MARGINKVILIGNLGNDPETKYMPSGGAVTNISLATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGAKVYVE
GSLRTRKWQDKNSGQDRYTTEIVASEMQMLDGRGEQGGFGQGMGGAGMGAAAGGQMGGGQPMGGPSGFDQQGGGFQGGYQ
QQGGQEAYGQGRTAPSPMAPANQQPQQQPNQGPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=289788 BTJ40_RS02875 WP_108731682.1 633697..634320(+) (ssb) [Microbulbifer sp. A4B17]
ATGGCCAGGGGTATTAATAAAGTAATTCTGATCGGTAATCTGGGGAATGACCCGGAAACCAAATATATGCCTAGTGGCGG
TGCTGTTACCAACATCAGCCTGGCTACCAGTGAGAGCTGGAAAGACAAGCAGACTGGCCAGCAGCAGGAGCGCACTGAGT
GGCACCGAGTAGTATTTTTTAACCGCCTGGCTGAGATCGCCGGCGAGTACTTGCGCAAGGGGGCCAAAGTTTATGTAGAG
GGCTCCCTACGCACCCGTAAGTGGCAGGACAAAAATTCCGGCCAGGATCGCTACACTACTGAAATCGTTGCCAGCGAAAT
GCAGATGTTGGACGGTCGCGGTGAGCAGGGCGGCTTTGGTCAGGGTATGGGTGGCGCTGGAATGGGCGCTGCCGCAGGTG
GTCAGATGGGTGGCGGCCAGCCGATGGGTGGTCCCAGCGGTTTTGACCAACAGGGCGGCGGTTTCCAGGGTGGCTACCAG
CAGCAGGGCGGCCAGGAGGCATACGGACAGGGGCGTACCGCTCCCTCACCGATGGCACCAGCTAACCAGCAGCCCCAGCA
ACAGCCAAACCAGGGTCCTGCCGGTGGCTTCGATAATAGCTTCGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1JN55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.524

100

0.502
  ssb Glaesserella parasuis strain SC1401

50.98

98.551

0.502
  ssb Neisseria gonorrhoeae MS11

42.584

100

0.43
  ssb Neisseria meningitidis MC58

42.647

98.551

0.42

Multiple sequence alignment