Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SAHV_RS01880 | Genome accession | NC_009782 |
| Coordinates | 412152..412655 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus subsp. aureus Mu3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 407995..456461 | 412152..412655 | within | 0 |
Gene organization within MGE regions
Location: 407995..456461
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAHV_RS01850 (SAHV_0357) | - | 408092..408937 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| SAHV_RS01855 (SAHV_0358) | - | 409091..409972 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| SAHV_RS01860 (SAHV_0359) | - | 410002..410205 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| SAHV_RS01865 (SAHV_0360) | ychF | 410217..411314 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| SAHV_RS01870 (SAHV_0361) | - | 411400..411591 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| SAHV_RS01875 (SAHV_0362) | rpsF | 411835..412131 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| SAHV_RS01880 (SAHV_0363) | ssbA | 412152..412655 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| SAHV_RS01885 (SAHV_0364) | rpsR | 412707..412949 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| SAHV_RS01890 (SAHV_0365) | - | 413226..414164 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| SAHV_RS14810 | - | 414203..414916 (-) | 714 | Protein_370 | tyrosine-type recombinase/integrase | - |
| SAHV_RS01900 (SAHV_0367) | selX | 415122..415733 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| SAHV_RS01905 (SAHV_0368) | - | 416102..416470 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| SAHV_RS01910 (SAHV_0369) | - | 416651..417223 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| SAHV_RS01915 (SAHV_0370) | - | 417360..417623 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| SAHV_RS01920 (SAHV_0371) | - | 417923..418174 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| SAHV_RS01925 (SAHV_0372) | - | 418213..418422 (-) | 210 | WP_000211677.1 | hypothetical protein | - |
| SAHV_RS01930 (SAHV_0373) | - | 418600..419181 (+) | 582 | WP_000158375.1 | histidine phosphatase family protein | - |
| SAHV_RS01935 (SAHV_0374) | - | 419247..419630 (-) | 384 | WP_000868259.1 | hypothetical protein | - |
| SAHV_RS01940 (SAHV_0375) | - | 419900..420526 (-) | 627 | WP_000746679.1 | NDxxF motif lipoprotein | - |
| SAHV_RS01945 (SAHV_0376) | - | 420599..420834 (-) | 236 | Protein_380 | hypothetical protein | - |
| SAHV_RS01950 (SAHV_0377) | ahpF | 420970..422493 (-) | 1524 | WP_000930514.1 | alkyl hydroperoxide reductase subunit F | - |
| SAHV_RS01955 (SAHV_0378) | ahpC | 422509..423078 (-) | 570 | WP_000052781.1 | alkyl hydroperoxide reductase subunit C | - |
| SAHV_RS01960 (SAHV_0379) | nfsA | 423570..424325 (+) | 756 | WP_001287099.1 | oxygen-insensitive NADPH nitroreductase | - |
| SAHV_RS01965 (SAHV_0380) | - | 424405..425793 (-) | 1389 | WP_000991018.1 | L-cystine transporter | - |
| SAHV_RS01970 | - | 425878..425976 (+) | 99 | WP_001792089.1 | hypothetical protein | - |
| SAHV_RS01975 (SAHV_0381) | - | 426640..427959 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| SAHV_RS15850 | - | 428007..428078 (+) | 72 | WP_370591525.1 | hypothetical protein | - |
| SAHV_RS01980 (SAHV_0382) | - | 428291..429247 (-) | 957 | WP_000956137.1 | hypothetical protein | - |
| SAHV_RS01985 (SAHV_0383) | - | 429365..430027 (-) | 663 | WP_000394690.1 | hypothetical protein | - |
| SAHV_RS01990 (SAHV_0384) | - | 430170..430577 (-) | 408 | WP_000763767.1 | general stress protein | - |
| SAHV_RS01995 (SAHV_0385) | xpt | 431090..431668 (+) | 579 | WP_000421410.1 | xanthine phosphoribosyltransferase | - |
| SAHV_RS02000 (SAHV_0386) | pbuX | 431668..432936 (+) | 1269 | WP_000793018.1 | xanthine permease PbuX | - |
| SAHV_RS02005 (SAHV_0387) | guaB | 432974..434440 (+) | 1467 | WP_000264071.1 | IMP dehydrogenase | - |
| SAHV_RS02010 (SAHV_0388) | guaA | 434465..436006 (+) | 1542 | WP_000424963.1 | glutamine-hydrolyzing GMP synthase | - |
| SAHV_RS02015 (SAHV_0389) | - | 436074..437267 (-) | 1194 | WP_000237797.1 | site-specific integrase | - |
| SAHV_RS02020 (SAHV_0390) | - | 437294..437494 (-) | 201 | WP_000633907.1 | DUF3173 family protein | - |
| SAHV_RS02025 (SAHV_0391) | - | 437992..438222 (-) | 231 | WP_000845143.1 | helix-turn-helix domain-containing protein | - |
| SAHV_RS02030 (SAHV_0392) | - | 438219..438641 (-) | 423 | WP_000804879.1 | RNA polymerase sigma factor | - |
| SAHV_RS02035 (SAHV_0394) | - | 439172..439525 (+) | 354 | WP_001227350.1 | helix-turn-helix domain-containing protein | - |
| SAHV_RS14825 | - | 439583..439767 (-) | 185 | Protein_400 | cysteine-rich KTR domain-containing protein | - |
| SAHV_RS02040 (SAHV_0395) | tet(M) | 439868..441787 (-) | 1920 | WP_000691737.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| SAHV_RS14830 | - | 441803..441919 (-) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| SAHV_RS02045 (SAHV_0396) | - | 442164..443093 (-) | 930 | WP_000584387.1 | conjugal transfer protein | - |
| SAHV_RS02050 (SAHV_0397) | - | 443110..444132 (-) | 1023 | WP_000768373.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| SAHV_RS02055 (SAHV_0398) | - | 444129..446156 (-) | 2028 | WP_000192393.1 | CD3337/EF1877 family mobilome membrane protein | - |
| SAHV_RS02060 (SAHV_0399) | - | 446153..448606 (-) | 2454 | WP_000331165.1 | ATP-binding protein | - |
| SAHV_RS02065 (SAHV_0400) | - | 448590..448985 (-) | 396 | WP_000723887.1 | conjugal transfer protein | - |
| SAHV_RS02070 (SAHV_0401) | - | 449057..449695 (-) | 639 | WP_000248477.1 | DUF6037 family protein | - |
| SAHV_RS02075 (SAHV_0402) | - | 449751..450251 (-) | 501 | WP_000425404.1 | antirestriction protein ArdA | - |
| SAHV_RS02080 (SAHV_0403) | - | 450312..451091 (-) | 780 | WP_000675717.1 | abortive infection family protein | - |
| SAHV_RS02085 (SAHV_0404) | - | 451133..451354 (-) | 222 | WP_001009054.1 | hypothetical protein | - |
| SAHV_RS02090 | - | 451351..451641 (-) | 291 | WP_000055376.1 | hypothetical protein | - |
| SAHV_RS02095 (SAHV_0405) | mobT | 451638..452822 (-) | 1185 | WP_000426689.1 | MobT family relaxase | - |
| SAHV_RS02100 (SAHV_0406) | - | 453004..454407 (-) | 1404 | WP_001130244.1 | FtsK/SpoIIIE domain-containing protein | - |
| SAHV_RS02105 (SAHV_0407) | - | 454429..455202 (-) | 774 | WP_000185761.1 | hypothetical protein | - |
| SAHV_RS02110 (SAHV_0408) | - | 455212..455589 (-) | 378 | WP_001234191.1 | YdcP family protein | - |
| SAHV_RS02115 (SAHV_0409) | - | 455610..455924 (-) | 315 | WP_000421279.1 | YdcP family protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=28966 SAHV_RS01880 WP_000934799.1 412152..412655(+) (ssbA) [Staphylococcus aureus subsp. aureus Mu3]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=28966 SAHV_RS01880 WP_000934799.1 412152..412655(+) (ssbA) [Staphylococcus aureus subsp. aureus Mu3]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |