Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EIP87_RS18510 | Genome accession | NZ_CP034354 |
| Coordinates | 3848789..3849286 (+) | Length | 165 a.a. |
| NCBI ID | WP_003114685.1 | Uniprot ID | A0A0H2ZGD4 |
| Organism | Pseudomonas aeruginosa strain IMP-13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3843789..3854286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EIP87_RS18495 (EIP87_18495) | bfr | 3843797..3844261 (+) | 465 | WP_003093668.1 | bacterioferritin | - |
| EIP87_RS18500 (EIP87_18500) | uvrA | 3844333..3847170 (-) | 2838 | WP_003093663.1 | excinuclease ABC subunit UvrA | Machinery gene |
| EIP87_RS18505 (EIP87_18505) | - | 3847384..3848772 (+) | 1389 | WP_009316331.1 | MFS transporter | - |
| EIP87_RS18510 (EIP87_18510) | ssb | 3848789..3849286 (+) | 498 | WP_003114685.1 | single-stranded DNA-binding protein | Machinery gene |
| EIP87_RS18515 (EIP87_18515) | pchA | 3849375..3850805 (-) | 1431 | WP_043543068.1 | isochorismate synthase PchA | - |
| EIP87_RS18520 (EIP87_18520) | pchB | 3850802..3851107 (-) | 306 | WP_003106950.1 | isochorismate lyase PchB | - |
| EIP87_RS18525 (EIP87_18525) | pchC | 3851107..3851862 (-) | 756 | WP_015502297.1 | pyochelin biosynthesis editing thioesterase PchC | - |
| EIP87_RS18530 (EIP87_18530) | pchD | 3851859..3853502 (-) | 1644 | WP_043543070.1 | pyochelin biosynthesis salicyl-AMP ligase PchD | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18557.46 Da Isoelectric Point: 5.2781
>NTDB_id=289205 EIP87_RS18510 WP_003114685.1 3848789..3849286(+) (ssb) [Pseudomonas aeruginosa strain IMP-13]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF
Nucleotide
Download Length: 498 bp
>NTDB_id=289205 EIP87_RS18510 WP_003114685.1 3848789..3849286(+) (ssb) [Pseudomonas aeruginosa strain IMP-13]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.659 |
100 |
0.636 |
| ssb | Glaesserella parasuis strain SC1401 |
52.486 |
100 |
0.576 |
| ssb | Neisseria gonorrhoeae MS11 |
48.045 |
100 |
0.521 |
| ssb | Neisseria meningitidis MC58 |
47.486 |
100 |
0.515 |