Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DBK22_RS10415 Genome accession   NZ_CP028961
Coordinates   2115754..2116398 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SRCM102752     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2110754..2121398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS10380 (DBK22_02089) - 2111939..2112370 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  DBK22_RS10385 (DBK22_02090) - 2112370..2112711 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  DBK22_RS10390 (DBK22_02091) - 2112704..2114185 (+) 1482 WP_076424452.1 Na+/H+ antiporter subunit D -
  DBK22_RS10395 (DBK22_02092) - 2114191..2114667 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  DBK22_RS10400 (DBK22_02093) - 2114667..2114951 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  DBK22_RS10405 (DBK22_02094) mnhG 2114935..2115309 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  DBK22_RS10410 (DBK22_02095) - 2115349..2115732 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  DBK22_RS10415 (DBK22_02096) comA 2115754..2116398 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  DBK22_RS10420 (DBK22_02097) comP 2116479..2118782 (-) 2304 WP_160242253.1 histidine kinase Regulator
  DBK22_RS10430 (DBK22_02099) comQ 2118935..2119921 (-) 987 WP_308219300.1 class 1 isoprenoid biosynthesis enzyme Regulator
  DBK22_RS10435 (DBK22_02100) degQ 2120052..2120192 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DBK22_RS10440 (DBK22_02101) - 2120658..2120999 (+) 342 WP_082998527.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=289000 DBK22_RS10415 WP_003152052.1 2115754..2116398(-) (comA) [Bacillus velezensis strain SRCM102752]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=289000 DBK22_RS10415 WP_003152052.1 2115754..2116398(-) (comA) [Bacillus velezensis strain SRCM102752]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment