Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DBK22_RS07560 Genome accession   NZ_CP028961
Coordinates   1574867..1575304 (-) Length   145 a.a.
NCBI ID   WP_012117983.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569867..1580304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS07510 (DBK22_01518) sinI 1570251..1570424 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  DBK22_RS07515 (DBK22_01519) sinR 1570458..1570793 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DBK22_RS07520 (DBK22_01520) tasA 1570841..1571626 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  DBK22_RS07525 (DBK22_01521) sipW 1571691..1572275 (-) 585 WP_012117977.1 signal peptidase I SipW -
  DBK22_RS07530 (DBK22_01522) tapA 1572247..1572918 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  DBK22_RS07535 (DBK22_01523) - 1573177..1573506 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  DBK22_RS07540 (DBK22_01524) - 1573545..1573724 (-) 180 WP_003153093.1 YqzE family protein -
  DBK22_RS07545 comGG 1573781..1574159 (-) 379 Protein_1504 competence type IV pilus minor pilin ComGG -
  DBK22_RS07550 (DBK22_01525) comGF 1574160..1574660 (-) 501 WP_268892471.1 competence type IV pilus minor pilin ComGF -
  DBK22_RS07555 (DBK22_01526) comGE 1574569..1574883 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  DBK22_RS07560 (DBK22_01527) comGD 1574867..1575304 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  DBK22_RS07565 (DBK22_01528) comGC 1575294..1575560 (-) 267 WP_236659163.1 competence type IV pilus major pilin ComGC Machinery gene
  DBK22_RS07570 (DBK22_01529) comGB 1575607..1576644 (-) 1038 WP_085342190.1 competence type IV pilus assembly protein ComGB Machinery gene
  DBK22_RS07575 (DBK22_01530) comGA 1576631..1577701 (-) 1071 WP_085342191.1 competence type IV pilus ATPase ComGA Machinery gene
  DBK22_RS07580 (DBK22_01531) - 1577898..1578848 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  DBK22_RS07585 (DBK22_01532) - 1578994..1580295 (+) 1302 WP_160242149.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16286.74 Da        Isoelectric Point: 10.2475

>NTDB_id=288984 DBK22_RS07560 WP_012117983.1 1574867..1575304(-) (comGD) [Bacillus velezensis strain SRCM102752]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=288984 DBK22_RS07560 WP_012117983.1 1574867..1575304(-) (comGD) [Bacillus velezensis strain SRCM102752]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.849

100

0.572

Multiple sequence alignment