Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   D1J60_RS12255 Genome accession   NZ_CP034350
Coordinates   2632136..2632789 (-) Length   217 a.a.
NCBI ID   WP_042803356.1    Uniprot ID   A0ABT7GTN4
Organism   Streptomyces sp. W1SF4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2627136..2637789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS12245 (D1J60_12245) - 2629659..2630627 (+) 969 WP_125821118.1 hypothetical protein -
  D1J60_RS12250 (D1J60_12250) clpX 2630695..2631981 (-) 1287 WP_007264060.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  D1J60_RS12255 (D1J60_12255) clpP 2632136..2632789 (-) 654 WP_042803356.1 ATP-dependent Clp protease proteolytic subunit Regulator
  D1J60_RS12260 (D1J60_12260) - 2632893..2633510 (-) 618 WP_007264062.1 ATP-dependent Clp protease proteolytic subunit -
  D1J60_RS12265 (D1J60_12265) tig 2633797..2635164 (-) 1368 WP_125821119.1 trigger factor -
  D1J60_RS12280 (D1J60_12280) - 2635764..2635958 (-) 195 WP_007264064.1 hypothetical protein -
  D1J60_RS12285 (D1J60_12285) - 2636123..2636578 (-) 456 WP_125603371.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23873.18 Da        Isoelectric Point: 4.5793

>NTDB_id=288985 D1J60_RS12255 WP_042803356.1 2632136..2632789(-) (clpP) [Streptomyces sp. W1SF4]
MQNNFSASGLYSGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI
YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAN
EILRMRDQLETMLAKHSSTPIEKIRDDIERDKILTAEDALAYGLIDQIVSTRKMNAV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=288985 D1J60_RS12255 WP_042803356.1 2632136..2632789(-) (clpP) [Streptomyces sp. W1SF4]
ATGCAGAACAACTTCTCCGCGAGCGGCCTCTACTCCGGCCCTCAGGTCGACAACCGGTACGTCATCCCGCGCTTCGTCGA
GCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGA
TCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCGATC
TACATCAACAGCCCGGGCGGCTCCTTCACCGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCA
GACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCACCCCCGGCAAGCGCATGGCCCTCC
CGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGCGAGCAGCTCTCCGACCTGGAGATCGCGGCCAAC
GAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGTCGACGCCGATCGAGAAGATCCGCGACGA
CATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGGCTGATCGACCAGATCGTCTCGACCCGGAAGA
TGAACGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

87.558

0.465
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

86.636

0.433
  clpP Streptococcus pyogenes JRS4

46.154

89.862

0.415
  clpP Streptococcus thermophilus LMG 18311

46.154

89.862

0.415
  clpP Streptococcus thermophilus LMD-9

46.154

89.862

0.415
  clpP Streptococcus pyogenes MGAS315

46.154

89.862

0.415
  clpP Streptococcus mutans UA159

45.641

89.862

0.41
  clpP Streptococcus pneumoniae R6

45.408

90.323

0.41
  clpP Streptococcus pneumoniae TIGR4

45.408

90.323

0.41
  clpP Streptococcus pneumoniae D39

45.408

90.323

0.41
  clpP Streptococcus pneumoniae Rx1

45.408

90.323

0.41
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

90.323

0.401
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

90.323

0.392

Multiple sequence alignment