Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DBK22_RS07515 Genome accession   NZ_CP028961
Coordinates   1570458..1570793 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565458..1575793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS07495 (DBK22_01515) gcvT 1566064..1567164 (-) 1101 WP_025284994.1 glycine cleavage system aminomethyltransferase GcvT -
  DBK22_RS07500 (DBK22_01516) - 1567588..1569258 (+) 1671 WP_072589380.1 DEAD/DEAH box helicase -
  DBK22_RS07505 (DBK22_01517) - 1569280..1570074 (+) 795 WP_015240204.1 YqhG family protein -
  DBK22_RS07510 (DBK22_01518) sinI 1570251..1570424 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  DBK22_RS07515 (DBK22_01519) sinR 1570458..1570793 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DBK22_RS07520 (DBK22_01520) tasA 1570841..1571626 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  DBK22_RS07525 (DBK22_01521) sipW 1571691..1572275 (-) 585 WP_012117977.1 signal peptidase I SipW -
  DBK22_RS07530 (DBK22_01522) tapA 1572247..1572918 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  DBK22_RS07535 (DBK22_01523) - 1573177..1573506 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  DBK22_RS07540 (DBK22_01524) - 1573545..1573724 (-) 180 WP_003153093.1 YqzE family protein -
  DBK22_RS07545 comGG 1573781..1574159 (-) 379 Protein_1504 competence type IV pilus minor pilin ComGG -
  DBK22_RS07550 (DBK22_01525) comGF 1574160..1574660 (-) 501 WP_268892471.1 competence type IV pilus minor pilin ComGF -
  DBK22_RS07555 (DBK22_01526) comGE 1574569..1574883 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  DBK22_RS07560 (DBK22_01527) comGD 1574867..1575304 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  DBK22_RS07565 (DBK22_01528) comGC 1575294..1575560 (-) 267 WP_236659163.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=288983 DBK22_RS07515 WP_003153104.1 1570458..1570793(+) (sinR) [Bacillus velezensis strain SRCM102752]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=288983 DBK22_RS07515 WP_003153104.1 1570458..1570793(+) (sinR) [Bacillus velezensis strain SRCM102752]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment