Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D1J60_RS11695 Genome accession   NZ_CP034350
Coordinates   2499033..2500955 (+) Length   640 a.a.
NCBI ID   WP_125596877.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2494033..2505955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS11660 (D1J60_11660) - 2494455..2494673 (+) 219 WP_125821057.1 hypothetical protein -
  D1J60_RS11680 (D1J60_11680) - 2495397..2495696 (+) 300 WP_125596886.1 YtxH domain-containing protein -
  D1J60_RS11685 (D1J60_11685) - 2495737..2497182 (+) 1446 WP_125821058.1 FGGY family carbohydrate kinase -
  D1J60_RS11690 (D1J60_11690) rcrP 2497303..2499036 (+) 1734 WP_125596880.1 ABC transporter ATP-binding protein Regulator
  D1J60_RS11695 (D1J60_11695) rcrQ 2499033..2500955 (+) 1923 WP_125596877.1 ABC transporter ATP-binding protein Regulator
  D1J60_RS11700 (D1J60_11700) - 2501025..2502170 (-) 1146 WP_241253230.1 RNA polymerase sigma factor -
  D1J60_RS11705 (D1J60_11705) - 2502277..2504355 (-) 2079 WP_125821059.1 molybdopterin oxidoreductase family protein -
  D1J60_RS11710 (D1J60_11710) - 2504544..2505308 (-) 765 WP_125823979.1 glucose 1-dehydrogenase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68917.44 Da        Isoelectric Point: 5.1986

>NTDB_id=288982 D1J60_RS11695 WP_125596877.1 2499033..2500955(+) (rcrQ) [Streptomyces sp. W1SF4]
MSGPGGRMMMGPAQRSMDFKGSGKRLLRQLAQDRGKLWGMVAAVVGSVGCAVLGPKILGGATDLVFAGIVGRQMPDGLTK
QQALDGLRERGQGGMADMLSGTDFTPGQGIDFGAVGVTALWALLVFVLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALLTVPVSVVVAARIGKRS
QPQFVAQWKTTGALNAHIEEMYSGHALVKVFGRQKESAAVFAEQNEELYRASFKAQLVSGIMQPVMFFISNINYVLVAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLSQVASMANLVQSGVASAERVYELLDAPEQEPDAEVPERPRELRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRGGIGMVLQDTWL
FGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAAEGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=288982 D1J60_RS11695 WP_125596877.1 2499033..2500955(+) (rcrQ) [Streptomyces sp. W1SF4]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCATGGACTTCAAGGGGTCCGGCAAGCGGCTGCT
GCGCCAGCTGGCGCAGGACCGGGGCAAGCTGTGGGGCATGGTCGCGGCCGTGGTCGGCAGTGTCGGCTGCGCCGTGCTCG
GGCCGAAGATCCTCGGCGGGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGGCAGATGCCGGACGGCCTGACCAAG
CAGCAGGCGCTGGACGGGCTGCGCGAGCGGGGCCAGGGCGGCATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
GCAGGGCATCGACTTCGGTGCCGTGGGGGTGACGGCGTTGTGGGCGCTGCTGGTGTTCGTCCTGGCGGGCCTGCTGATGC
TGGTCGCCACGCGGCTGTCGAACCACGTGATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGTTGTCGTACTTCGACCAGCAGAAGCGCGGGGAGGTGCTGAGCCGGGCGACGAACGACATAGACAACATCGG
CCAGACCCTCCAGCAGACGATGGGCCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTGGTGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGTTGGTCGCGCTGCTGACCGTGCCGGTGTCGGTGGTGGTCGCGGCGAGGATCGGCAAGAGGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACCACGGGCGCGCTCAACGCCCACATCGAGGAGATGTACTCCGGCCACGCGCT
GGTGAAGGTCTTCGGGCGGCAGAAGGAGTCGGCGGCGGTCTTCGCCGAGCAGAACGAGGAGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGGTCGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGTCGCAGGTGGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCGCCGGAGCAGGAGCCGGACGCGGAGGTCCCGGAGCGTCCGCGGGAGCTGCGCGGTCAGGTGACCCTGGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTCATCGAGAACCTCTCGCTGACGGTGGAGCCGGGGCAGACGGTCGCCATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGCCC
TGGACGGGGTGGACATCGCCAAGATGACCCGCGAGGAGCTGCGCGGCGGGATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGGACGATCGCGGAGAACATCGCCTACGGCGCGTCCCGCGAGGTGACGCGCGGCGAGATCGAGGAGGCCGCGCG
GGCGGCGCACGCGGACCGTTTCATCCGCACGCTGCCGGACGGCTACGACACGGTGCTGGACGACGAGGGCGCGGGTGTCA
GCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGTTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCGACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGGCCGAGGGCGCGTACGCGCGGTTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.318

82.5

0.366

Multiple sequence alignment