Detailed information NTG0288942

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: C6567_RS08100
• Genome accession: NZ_CP034349
• Coordinates: 1648954..1649640 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692886.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 80wphwpl
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1643954..1654640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6567_RS08055 (C6567_08055)	rpmA	1644674..1644958 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
C6567_RS08060 (C6567_08060)	-	1644970..1645290 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
C6567_RS08065 (C6567_08065)	rplU	1645296..1645604 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
C6567_RS08070 (C6567_08070)	mreD	1645897..1646427 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
C6567_RS08075 (C6567_08075)	mreC	1646427..1647269 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
C6567_RS08080 (C6567_08080)	-	1647469..1647588 (-)	120	WP_000840603.1	hypothetical protein	-
C6567_RS08085 (C6567_08085)	-	1647656..1648129 (-)	474	WP_001236733.1	DUF4930 family protein	-
C6567_RS08090 (C6567_08090)	-	1648289..1648486 (+)	198	WP_000025835.1	hypothetical protein	-
C6567_RS08095 (C6567_08095)	-	1648602..1648886 (-)	285	WP_000171861.1	hypothetical protein	-
C6567_RS08100 (C6567_08100)	ysxA/radC	1648954..1649640 (-)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
C6567_RS08105 (C6567_08105)	-	1649637..1650344 (-)	708	WP_000261106.1	A24 family peptidase	-
C6567_RS08115 (C6567_08115)	-	1650605..1651876 (-)	1272	WP_001108339.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
C6567_RS08120 (C6567_08120)	-	1651889..1654519 (-)	2631	WP_000425358.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.24 Da
• Isoelectric Point: 6.7572

>NTDB_id=288942 C6567_RS08100 WP_000692886.1 1648954..1649640(-) (ysxA/radC) [Staphylococcus aureus strain 80wphwpl]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=288942 C6567_RS08100 WP_000692886.1 1648954..1649640(-) (ysxA/radC) [Staphylococcus aureus strain 80wphwpl]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377