Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DCO17_RS09520 Genome accession   NZ_CP028942
Coordinates   1869739..1870191 (-) Length   150 a.a.
NCBI ID   WP_173956481.1    Uniprot ID   A0A6M9Q2C9
Organism   Polynucleobacter tropicus strain MWH-UH21B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1864739..1875191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO17_RS09505 (DCO17_09455) ilvA 1866384..1867904 (+) 1521 WP_173956478.1 threonine ammonia-lyase, biosynthetic -
  DCO17_RS09510 (DCO17_09460) - 1867907..1868821 (+) 915 WP_173956479.1 5'-nucleotidase -
  DCO17_RS09515 (DCO17_09465) queF 1868824..1869651 (+) 828 WP_173956480.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DCO17_RS09520 (DCO17_09470) ssb 1869739..1870191 (-) 453 WP_173956481.1 single-stranded DNA-binding protein Machinery gene
  DCO17_RS09525 (DCO17_09475) - 1870284..1871450 (-) 1167 WP_173956482.1 MFS transporter -
  DCO17_RS09530 (DCO17_09480) uvrA 1871488..1874388 (+) 2901 WP_173956483.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16203.08 Da        Isoelectric Point: 5.9393

>NTDB_id=288714 DCO17_RS09520 WP_173956481.1 1869739..1870191(-) (ssb) [Polynucleobacter tropicus strain MWH-UH21B]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGGDSGESYSRSKSAEQPAPAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=288714 DCO17_RS09520 WP_173956481.1 1869739..1870191(-) (ssb) [Polynucleobacter tropicus strain MWH-UH21B]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGGCGCGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
AGTTACCAATATTTCAGTAGCAACATCAGATCGCTACAAAGATAAGCAAACAGGTGAAATGAAAGAAACCACGGAATGGC
ATCGCGTTGCATTCTTTGGAAAGCTTGCGGAGATCGCAGGTCAATATCTTAAAAAAGGTTCACAGGTTTACGTAGAGGGT
CGTTTACGTACGCGTAAATGGACGGATGCGAGTGGTCAAGAAAAGTACTCCACAGAAATCGTTGCTGAAACTATGCAAAT
GCTTGGTGGCAAGCCAGTTGGCGGTGGCGATAGTGGCGAGAGCTATAGTCGTTCTAAGTCTGCTGAGCAGCCGGCTCCAG
CCGCTTCTAATGCCGCCTCATTGGGTGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9Q2C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.607
  ssb Glaesserella parasuis strain SC1401

47.222

100

0.567
  ssb Neisseria meningitidis MC58

47.126

100

0.547
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.54

Multiple sequence alignment