Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DCO16_RS10265 Genome accession   NZ_CP028941
Coordinates   1991900..1992355 (-) Length   151 a.a.
NCBI ID   WP_173943550.1    Uniprot ID   A0A6M9PSW6
Organism   Polynucleobacter antarcticus strain LimPoW16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1986900..1997355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO16_RS10250 (DCO16_10225) ilvA 1988499..1990019 (+) 1521 WP_173943547.1 threonine ammonia-lyase, biosynthetic -
  DCO16_RS10255 (DCO16_10230) - 1990019..1990933 (+) 915 WP_173943548.1 5'-nucleotidase -
  DCO16_RS10260 (DCO16_10235) queF 1990987..1991814 (+) 828 WP_173943549.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  DCO16_RS10265 (DCO16_10240) ssb 1991900..1992355 (-) 456 WP_173943550.1 single-stranded DNA-binding protein Machinery gene
  DCO16_RS10270 (DCO16_10245) - 1992396..1993568 (-) 1173 WP_173943551.1 MFS transporter -
  DCO16_RS10275 (DCO16_10250) uvrA 1993606..1996500 (+) 2895 WP_173943552.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16262.10 Da        Isoelectric Point: 5.9340

>NTDB_id=288702 DCO16_RS10265 WP_173943550.1 1991900..1992355(-) (ssb) [Polynucleobacter antarcticus strain LimPoW16]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTSEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVADSMQMLGGKPVGGSGDGGESYARSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=288702 DCO16_RS10265 WP_173943550.1 1991900..1992355(-) (ssb) [Polynucleobacter antarcticus strain LimPoW16]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTAGGGCGTGACCCAGAAACACGTTATATGCCAAGCGGCGATGC
CGTGACCAATATTTCAGTAGCGACATCAGATCGTTACAAAGATAAGCAAACTAGCGAAATGAAAGAAACCACAGAATGGC
ATCGCGTGGCATTCTTTGGCAAACTTGCTGAGATCGCTGGGCAATATCTCAAAAAAGGTTCGCAGGTTTATGTTGAAGGC
CGTTTACGTACACGTAAATGGACTGATGCTAGTGGCCAAGAAAAGTACTCCACGGAGATCGTTGCAGACTCTATGCAAAT
GTTAGGTGGTAAGCCAGTAGGCGGCAGTGGTGATGGTGGTGAAAGCTATGCCCGCTCAAAGCCGGCTGAGCAGTCTGCCC
CAGCATCCTCTAATGCCGCATCACTGGGTGCTATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9PSW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

45.455

100

0.53
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.53

Multiple sequence alignment