Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   pm9n_RS10565 Genome accession   NZ_CP028927
Coordinates   2234685..2235185 (-) Length   166 a.a.
NCBI ID   WP_010907419.1    Uniprot ID   -
Organism   Pasteurella multocida strain 9N     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2229685..2240185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  pm9n_RS10550 (pm9n_10550) - 2229709..2231745 (-) 2037 WP_010907417.1 integrase -
  pm9n_RS10555 (pm9n_10555) - 2231748..2233268 (-) 1521 WP_010907418.1 site-specific integrase -
  pm9n_RS10560 (pm9n_10560) - 2233255..2234535 (-) 1281 WP_016533798.1 site-specific integrase -
  pm9n_RS10565 (pm9n_10565) ssb 2234685..2235185 (-) 501 WP_010907419.1 single-stranded DNA-binding protein Machinery gene
  pm9n_RS10570 (pm9n_10570) uvrA 2235357..2238188 (+) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  pm9n_RS10575 (pm9n_10575) sodC 2238259..2238819 (+) 561 WP_010907421.1 superoxide dismutase family protein -
  pm9n_RS10580 (pm9n_10580) rlmB 2238905..2239642 (-) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18687.70 Da        Isoelectric Point: 5.3353

>NTDB_id=288640 pm9n_RS10565 WP_010907419.1 2234685..2235185(-) (ssb) [Pasteurella multocida strain 9N]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=288640 pm9n_RS10565 WP_010907419.1 2234685..2235185(-) (ssb) [Pasteurella multocida strain 9N]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTAGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.681

100

0.753
  ssb Vibrio cholerae strain A1552

54.144

100

0.59
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47

Multiple sequence alignment