Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DB278_RS07210 Genome accession   NZ_CP028926
Coordinates   1496654..1497865 (+) Length   403 a.a.
NCBI ID   WP_108511812.1    Uniprot ID   -
Organism   Pasteurella multocida strain 20N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491654..1502865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB278_RS07185 (DB278_07185) - 1492130..1492924 (-) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -
  DB278_RS07190 (DB278_07190) rppH 1492927..1493523 (-) 597 WP_108511811.1 RNA pyrophosphohydrolase -
  DB278_RS07195 (DB278_07195) ampD 1494109..1494675 (-) 567 WP_083004802.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DB278_RS07200 (DB278_07200) pilA 1494835..1495269 (+) 435 WP_083004804.1 prepilin peptidase-dependent pilin Machinery gene
  DB278_RS07205 (DB278_07205) pilB 1495269..1496654 (+) 1386 WP_083004806.1 GspE/PulE family protein Machinery gene
  DB278_RS07210 (DB278_07210) pilC 1496654..1497865 (+) 1212 WP_108511812.1 type II secretion system F family protein Machinery gene
  DB278_RS07215 (DB278_07215) - 1497865..1498590 (+) 726 WP_108511813.1 prepilin peptidase -
  DB278_RS07220 (DB278_07220) coaE 1498602..1499222 (+) 621 WP_096743227.1 dephospho-CoA kinase -
  DB278_RS07225 (DB278_07225) yacG 1499233..1499436 (+) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  DB278_RS07230 (DB278_07230) - 1499436..1499705 (+) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  DB278_RS07235 (DB278_07235) - 1500154..1501527 (+) 1374 WP_096743226.1 alanine/glycine:cation symporter family protein -
  DB278_RS07240 (DB278_07240) raiA 1501772..1502089 (+) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 45962.05 Da        Isoelectric Point: 9.3005

>NTDB_id=288620 DB278_RS07210 WP_108511812.1 1496654..1497865(+) (pilC) [Pasteurella multocida strain 20N]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVQQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASHIELTQWLCQLLCSLESGFSFSTALATQDCYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVKQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALLTFLPTQKSGIAKHVLTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=288620 DB278_RS07210 WP_108511812.1 1496654..1497865(+) (pilC) [Pasteurella multocida strain 20N]
ATGAAAAAATTAAAAATGTTTCGCTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCAGCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCCATATTGAGTTAACGCAATGGTTATGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATTGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAAACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCTGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGTGCTTACCGAGATGCGACTTGCTGAGGAAGTCCAGTTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.642

100

0.489
  pilC Haemophilus influenzae 86-028NP

48.395

100

0.486
  pilC Glaesserella parasuis strain SC1401

39.506

100

0.397

Multiple sequence alignment