Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DB278_RS06490 | Genome accession | NZ_CP028926 |
| Coordinates | 1326448..1326948 (-) | Length | 166 a.a. |
| NCBI ID | WP_083004547.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain 20N | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1321448..1331948
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DB278_RS06450 (DB278_06450) | ybeD | 1322015..1322311 (+) | 297 | WP_104884088.1 | DUF493 family protein YbeD | - |
| DB278_RS06455 (DB278_06455) | lipB | 1322318..1322974 (+) | 657 | WP_096743306.1 | lipoyl(octanoyl) transferase LipB | - |
| DB278_RS06460 (DB278_06460) | lipA | 1323039..1324001 (+) | 963 | WP_083004523.1 | lipoyl synthase | - |
| DB278_RS06465 (DB278_06465) | - | 1324067..1324486 (-) | 420 | WP_083004526.1 | DUF417 family protein | - |
| DB278_RS06480 (DB278_06480) | folD | 1325129..1325983 (+) | 855 | WP_108511777.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| DB278_RS06490 (DB278_06490) | ssb | 1326448..1326948 (-) | 501 | WP_083004547.1 | single-stranded DNA-binding protein | Machinery gene |
| DB278_RS06495 (DB278_06495) | uvrA | 1327120..1329951 (+) | 2832 | WP_108511778.1 | excinuclease ABC subunit UvrA | - |
| DB278_RS06500 (DB278_06500) | sodC | 1330022..1330582 (+) | 561 | WP_096743301.1 | superoxide dismutase family protein | - |
| DB278_RS06505 (DB278_06505) | rlmB | 1330668..1331405 (-) | 738 | WP_083004553.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18685.73 Da Isoelectric Point: 5.3353
>NTDB_id=288613 DB278_RS06490 WP_083004547.1 1326448..1326948(-) (ssb) [Pasteurella multocida strain 20N]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGVQPSRPATKPAPQNEPPMDMGFE
EDNIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=288613 DB278_RS06490 WP_083004547.1 1326448..1326948(-) (ssb) [Pasteurella multocida strain 20N]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGAAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGTGTCGCCACAAGCGAAAGTTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGCCGTCAAGCTGAAGTAGCCGGAGAATACCTCCGTAAAGGTTCAAAGGTGTATGTAGAAGGC
CGTCTAAAAACACGCAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACGGAAATTCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATACAATGCCCCAACAG
GTGGCTACGGCGTACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCCCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
67.568 |
100 |
0.753 |
| ssb | Vibrio cholerae strain A1552 |
53.591 |
100 |
0.584 |
| ssb | Neisseria meningitidis MC58 |
43.503 |
100 |
0.464 |
| ssb | Neisseria gonorrhoeae MS11 |
43.503 |
100 |
0.464 |