Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBO93_RS17155 Genome accession   NZ_CP028924
Coordinates   3955414..3956106 (-) Length   230 a.a.
NCBI ID   WP_108457413.1    Uniprot ID   -
Organism   Colwellia sp. Arc7-D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3950414..3961106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBO93_RS17130 (DBO93_17130) - 3950659..3952053 (+) 1395 WP_239059031.1 peptidoglycan DD-metalloendopeptidase family protein -
  DBO93_RS19150 - 3952070..3952708 (+) 639 WP_275403657.1 anhydro-N-acetylmuramic acid kinase -
  DBO93_RS19155 - 3952716..3953234 (+) 519 WP_275403658.1 anhydro-N-acetylmuramic acid kinase -
  DBO93_RS17140 (DBO93_17140) - 3953407..3953598 (+) 192 WP_108457410.1 hypothetical protein -
  DBO93_RS17145 (DBO93_17145) - 3953905..3954801 (+) 897 WP_108457411.1 TIGR01777 family oxidoreductase -
  DBO93_RS17150 (DBO93_17150) - 3954824..3955219 (+) 396 WP_108457412.1 hypothetical protein -
  DBO93_RS17155 (DBO93_17155) ssb 3955414..3956106 (-) 693 WP_108457413.1 single-stranded DNA-binding protein Machinery gene
  DBO93_RS17160 (DBO93_17160) - 3956367..3956762 (-) 396 WP_108457414.1 thioesterase family protein -
  DBO93_RS17165 (DBO93_17165) - 3956940..3957638 (+) 699 WP_108457415.1 2OG-Fe(II) oxygenase -
  DBO93_RS17170 (DBO93_17170) - 3957750..3958505 (+) 756 WP_108457416.1 transporter substrate-binding domain-containing protein -
  DBO93_RS17175 (DBO93_17175) pssA 3958596..3959927 (-) 1332 WP_108457417.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24754.11 Da        Isoelectric Point: 5.9149

>NTDB_id=288595 DBO93_RS17155 WP_108457413.1 3955414..3956106(-) (ssb) [Colwellia sp. Arc7-D]
MFMAGVNKVIILGNLGKDPEVRFMPNGGGVANLTIATSESWKDKQTGEQKEKTEWHRVVMFGKLAEIAGEYLKKGSKVYI
EGALQTRKWQNQQGQDQYTTEIVVQGFNGTMQMLDSRGGSGAGAGGFNQQAPQQSGGFQQQAPAPQQSSGFNQQAAPQQA
YNKPAQQSGGYQQPAPQQSNSNSQQSGGYQQQSAPSQSGGFGQQSGGFQQNAPKVNPQEPTIDFDDDIPF

Nucleotide


Download         Length: 693 bp        

>NTDB_id=288595 DBO93_RS17155 WP_108457413.1 3955414..3956106(-) (ssb) [Colwellia sp. Arc7-D]
TTGTTCATGGCTGGTGTCAATAAAGTAATTATTTTAGGTAACTTAGGGAAAGACCCTGAAGTGCGTTTTATGCCTAACGG
TGGTGGGGTTGCTAACCTTACTATTGCAACTTCTGAAAGTTGGAAAGACAAGCAAACGGGTGAACAAAAAGAAAAAACTG
AATGGCACCGTGTAGTTATGTTCGGTAAATTAGCCGAAATCGCTGGCGAATATTTAAAGAAAGGCTCTAAAGTTTATATT
GAAGGTGCTTTGCAAACACGTAAGTGGCAAAACCAACAAGGCCAAGATCAATATACAACTGAGATAGTCGTTCAAGGTTT
TAACGGCACAATGCAAATGTTAGATTCTCGTGGTGGTAGCGGTGCAGGTGCAGGCGGATTCAATCAACAAGCACCTCAAC
AATCAGGTGGTTTCCAGCAGCAAGCCCCAGCTCCACAACAAAGTAGTGGATTTAATCAGCAAGCAGCGCCTCAACAAGCT
TATAACAAACCTGCGCAACAGTCTGGAGGTTATCAACAACCAGCACCGCAGCAATCAAACTCAAACTCTCAACAATCTGG
TGGATATCAGCAGCAGTCAGCGCCTTCGCAGTCTGGTGGATTTGGGCAGCAATCAGGTGGTTTTCAACAGAATGCACCAA
AAGTAAACCCACAAGAACCAACGATTGATTTTGATGACGATATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.586

100

0.53
  ssb Glaesserella parasuis strain SC1401

48.684

99.13

0.483
  ssb Neisseria gonorrhoeae MS11

38.667

97.826

0.378
  ssb Neisseria meningitidis MC58

38.222

97.826

0.374

Multiple sequence alignment